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  5. Adi_g115862

Adi_g115862 (AtRABG3d, RABG3d)


Aliases : AtRABG3d, RABG3d

Description : G-class RAB GTPase & original description: none


Gene families : OG0000865 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000865_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Adi_g115862

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00059p00072050 AtRABG3d,... Vesicle trafficking.regulation of membrane tethering and... 0.02 OrthoFinder output from all 47 species
Ala_g37489 AtRABG3d, RABG3d G-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g05818 AtRABG3d, RABG3d G-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g04092 AtRABG3d, RABG3d G-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g07308 ATRABG3C, ATRAB7D, RABG3c G-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os01g51700.1 ATRABG3B,... G-class RAB GTPase 0.03 OrthoFinder output from all 47 species
Len_g17913 AtRABG3d, RABG3d G-class RAB GTPase & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0034.g011168 ATRABG3C, ATRAB7D, RABG3c G-class RAB GTPase & original description: CDS=38-799 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0287.g027148 ATRABG3C, ATRAB7D, RABG3c G-class RAB GTPase & original description: CDS=209-802 0.02 OrthoFinder output from all 47 species
Solyc01g109520.3.1 ATRAB7B, RAB7B,... G-class RAB GTPase 0.02 OrthoFinder output from all 47 species
Solyc03g120750.3.1 AtRABG3d,... G-class RAB GTPase 0.04 OrthoFinder output from all 47 species
Tin_g00266 AtRABG3d, RABG3d G-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g04335 AtRABG3d, RABG3d G-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e028178_P003 ATRABG3B,... G-class RAB GTPase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006465 signal peptide processing IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0016485 protein processing IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
InterPro domains Description Start Stop
IPR001806 Small_GTPase 10 177
No external refs found!