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Aliases : ESP4
Description : component *(Symplekin/Pta1) of Cleavage and Polyadenylation Specificity Factor (CPSF) complex & original description: none
Gene families : OG0002204 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002204_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Ehy_g19241 | |
| Cluster | HCCA: Cluster_35 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00007p00088050 | ESP4,... | RNA processing.RNA 3-end polyadenylation.Cleavage and... | 0.03 | OrthoFinder output from all 47 species | |
| AT5G01400 | ESP4 | HEAT repeat-containing protein | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g081403 | No alias | component *(Symplekin/Pta1) of Cleavage and... | 0.04 | OrthoFinder output from all 47 species | |
| Ala_g04252 | No alias | component *(Symplekin/Pta1) of Cleavage and... | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g06408 | ESP4 | component *(Symplekin/Pta1) of Cleavage and... | 0.04 | OrthoFinder output from all 47 species | |
| Als_g23718 | No alias | component *(Symplekin/Pta1) of Cleavage and... | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g08267 | ESP4 | component *(Symplekin/Pta1) of Cleavage and... | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g22132 | No alias | component *(Symplekin/Pta1) of Cleavage and... | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene50297.t1 | Aspi01Gene50297 | component *(Symplekin/Pta1) of Cleavage and... | 0.04 | OrthoFinder output from all 47 species | |
| Aspi01Gene71059.t3 | Aspi01Gene71059 | component *(Symplekin/Pta1) of Cleavage and... | 0.04 | OrthoFinder output from all 47 species | |
| Cba_g36378 | No alias | component *(Symplekin/Pta1) of Cleavage and... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.01G050700.1 | Ceric.01G050700 | component *(Symplekin/Pta1) of Cleavage and... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.12G019100.1 | ESP4, Ceric.12G019100 | component *(Symplekin/Pta1) of Cleavage and... | 0.04 | OrthoFinder output from all 47 species | |
| Dac_g01061 | ESP4 | component *(Symplekin/Pta1) of Cleavage and... | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g02040 | No alias | component *(Symplekin/Pta1) of Cleavage and... | 0.04 | OrthoFinder output from all 47 species | |
| Dde_g04949 | ESP4 | component *(Symplekin/Pta1) of Cleavage and... | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01009244001 | No alias | RNA processing.RNA 3-end polyadenylation.Cleavage and... | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01011157001 | ESP4 | RNA processing.RNA 3-end polyadenylation.Cleavage and... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_24672 | No alias | component Symplekin/Pta1 of Cleavage and Polyadenylation... | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os07g49320.1 | ESP4, LOC_Os07g49320 | component Symplekin/Pta1 of Cleavage and Polyadenylation... | 0.04 | OrthoFinder output from all 47 species | |
| Len_g19439 | No alias | component *(Symplekin/Pta1) of Cleavage and... | 0.04 | OrthoFinder output from all 47 species | |
| Lfl_g06265 | No alias | component *(Symplekin/Pta1) of Cleavage and... | 0.03 | OrthoFinder output from all 47 species | |
| MA_10426054g0010 | No alias | component Symplekin/Pta1 of Cleavage and Polyadenylation... | 0.02 | OrthoFinder output from all 47 species | |
| MA_433916g0010 | No alias | component Symplekin/Pta1 of Cleavage and Polyadenylation... | 0.03 | OrthoFinder output from all 47 species | |
| Mp6g03410.1 | No alias | component Symplekin/Pta1 of Cleavage and Polyadenylation... | 0.02 | OrthoFinder output from all 47 species | |
| Msp_g24896 | ESP4 | component *(Symplekin/Pta1) of Cleavage and... | 0.05 | OrthoFinder output from all 47 species | |
| Ore_g27266 | No alias | component *(Symplekin/Pta1) of Cleavage and... | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g12624 | No alias | component *(Symplekin/Pta1) of Cleavage and... | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g08972 | No alias | component *(Symplekin/Pta1) of Cleavage and... | 0.04 | OrthoFinder output from all 47 species | |
| Sam_g17991 | No alias | component *(Symplekin/Pta1) of Cleavage and... | 0.04 | OrthoFinder output from all 47 species | |
| Smo442688 | ESP4 | RNA processing.RNA 3-end polyadenylation.Cleavage and... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc04g076900.2.1 | Solyc04g076900 | component Symplekin/Pta1 of Cleavage and Polyadenylation... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc04g076910.3.1 | Solyc04g076910 | component Symplekin/Pta1 of Cleavage and Polyadenylation... | 0.06 | OrthoFinder output from all 47 species | |
| Solyc09g005330.3.1 | ESP4, Solyc09g005330 | component Symplekin/Pta1 of Cleavage and Polyadenylation... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc09g005340.3.1 | ESP4, Solyc09g005340 | component Symplekin/Pta1 of Cleavage and Polyadenylation... | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g15317 | ESP4 | component *(Symplekin/Pta1) of Cleavage and... | 0.04 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003690 | double-stranded DNA binding | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006281 | DNA repair | IEP | HCCA |
| BP | GO:0006298 | mismatch repair | IEP | HCCA |
| BP | GO:0006396 | RNA processing | IEP | HCCA |
| BP | GO:0006399 | tRNA metabolic process | IEP | HCCA |
| BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | HCCA |
| BP | GO:0008033 | tRNA processing | IEP | HCCA |
| MF | GO:0008168 | methyltransferase activity | IEP | HCCA |
| MF | GO:0008270 | zinc ion binding | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | HCCA |
| MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | HCCA |
| MF | GO:0030983 | mismatched DNA binding | IEP | HCCA |
| BP | GO:0033554 | cellular response to stress | IEP | HCCA |
| BP | GO:0034470 | ncRNA processing | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
| BP | GO:0043038 | amino acid activation | IEP | HCCA |
| BP | GO:0043039 | tRNA aminoacylation | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| BP | GO:0051716 | cellular response to stimulus | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| No external refs found! |