Aliases : CPSF30, ATCPSF30
Description : component *(CPSF30/Yth1) of Cleavage and Polyadenylation Specificity Factor (CPSF) complex & original description: none
Gene families : OG0003202 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003202_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Cba_g03380 | CPSF30, ATCPSF30 | component *(CPSF30/Yth1) of Cleavage and Polyadenylation... | 0.03 | OrthoFinder output from all 47 species | |
Cba_g04048 | CPSF30, ATCPSF30 | component *(CPSF30/Yth1) of Cleavage and Polyadenylation... | 0.04 | OrthoFinder output from all 47 species | |
Ceric.1Z025100.1 | CPSF30,... | component *(CPSF30/Yth1) of Cleavage and Polyadenylation... | 0.02 | OrthoFinder output from all 47 species | |
Ceric.29G075600.1 | CPSF30,... | component *(CPSF30/Yth1) of Cleavage and Polyadenylation... | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os06g46400.1 | CPSF30,... | component CPSF30/Yth1 of Cleavage and Polyadenylation... | 0.03 | OrthoFinder output from all 47 species | |
Mp6g15200.1 | CPSF30, ATCPSF30 | component CPSF30/Yth1 of Cleavage and Polyadenylation... | 0.03 | OrthoFinder output from all 47 species | |
Pir_g12568 | CPSF30, ATCPSF30 | component *(CPSF30/Yth1) of Cleavage and Polyadenylation... | 0.02 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0079.g017792 | CPSF30, ATCPSF30 | component *(CPSF30/Yth1) of Cleavage and Polyadenylation... | 0.02 | OrthoFinder output from all 47 species | |
Sam_g17308 | No alias | component *(CPSF30/Yth1) of Cleavage and Polyadenylation... | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e012971_P001 | CPSF30,... | component CPSF30/Yth1 of Cleavage and Polyadenylation... | 0.02 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003723 | RNA binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003743 | translation initiation factor activity | IEP | HCCA |
MF | GO:0004386 | helicase activity | IEP | HCCA |
MF | GO:0004843 | cysteine-type deubiquitinase activity | IEP | HCCA |
MF | GO:0005515 | protein binding | IEP | HCCA |
CC | GO:0005737 | cytoplasm | IEP | HCCA |
CC | GO:0005852 | eukaryotic translation initiation factor 3 complex | IEP | HCCA |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0006351 | DNA-templated transcription | IEP | HCCA |
BP | GO:0006397 | mRNA processing | IEP | HCCA |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
MF | GO:0008234 | cysteine-type peptidase activity | IEP | HCCA |
BP | GO:0009892 | negative regulation of metabolic process | IEP | HCCA |
BP | GO:0010605 | negative regulation of macromolecule metabolic process | IEP | HCCA |
BP | GO:0010629 | negative regulation of gene expression | IEP | HCCA |
BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
BP | GO:0016579 | protein deubiquitination | IEP | HCCA |
MF | GO:0019783 | ubiquitin-like protein peptidase activity | IEP | HCCA |
BP | GO:0031047 | RNA-mediated gene silencing | IEP | HCCA |
BP | GO:0031123 | RNA 3'-end processing | IEP | HCCA |
BP | GO:0031124 | mRNA 3'-end processing | IEP | HCCA |
BP | GO:0032774 | RNA biosynthetic process | IEP | HCCA |
MF | GO:0043565 | sequence-specific DNA binding | IEP | HCCA |
BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
BP | GO:0048519 | negative regulation of biological process | IEP | HCCA |
BP | GO:0070646 | protein modification by small protein removal | IEP | HCCA |
BP | GO:0070647 | protein modification by small protein conjugation or removal | IEP | HCCA |
BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
BP | GO:0097659 | nucleic acid-templated transcription | IEP | HCCA |
MF | GO:0101005 | deubiquitinase activity | IEP | HCCA |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
No external refs found! |