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  5. Adi_g079901

Adi_g079901 (At-RS41, RS41, ATRSP41)


Aliases : At-RS41, RS41, ATRSP41

Description : RNA splicing factor *(RS31/40/41) & original description: none


Gene families : OG0002134 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002134_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Adi_g079901

Target Alias Description ECC score Gene Family Method Actions
AT4G25500 ATRSP40,... arginine/serine-rich splicing factor 35 0.02 OrthoFinder output from all 47 species
Als_g02279 At-RS41, RS41, ATRSP41 RNA splicing factor *(RS31/40/41) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0126.g048647 At-RS41, RS41, ATRSP41 RNA splicing factor *(RS31/40/41) & original... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000852.9 At-RS31, RS31,... RNA processing.RNA splicing.spliceosome-associated... 0.02 OrthoFinder output from all 47 species
Dcu_g09104 At-RS31, RS31,... RNA splicing factor *(RS31/40/41) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01027520001 At-RS41, RS41, ATRSP41 RNA processing.RNA splicing.spliceosome-associated... 0.02 OrthoFinder output from all 47 species
Msp_g24737 At-RS41, RS41, ATRSP41 RNA splicing factor *(RS31/40/41) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e008772_P001 At-RS31, RS31,... RS31/40/41 RNA splicing factor 0.02 OrthoFinder output from all 47 species
Zm00001e040621_P001 At-RS31, RS31,... RS31/40/41 RNA splicing factor 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 46 104
IPR000504 RRM_dom 140 202
No external refs found!