Aliases : EMB976
Description : plastidial splicing factor *(PDM4) & original description: none
Gene families : OG0007469 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007469_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00048p00132600 | EMB976,... | Pentatricopeptide repeat-containing protein At5g27270... | 0.02 | OrthoFinder output from all 47 species | |
Ala_g07260 | No alias | plastidial splicing factor *(PDM4) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Als_g13289 | EMB976 | plastidial splicing factor *(PDM4) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Cba_g01274 | EMB976 | plastidial splicing factor *(PDM4) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01024409001 | EMB976 | Pentatricopeptide repeat-containing protein At5g27270... | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os06g02120.1 | EMB976, LOC_Os06g02120 | Pentatricopeptide repeat-containing protein At5g27270... | 0.04 | OrthoFinder output from all 47 species | |
MA_10434955g0010 | EMB976 | Pentatricopeptide repeat-containing protein At5g27270... | 0.02 | OrthoFinder output from all 47 species | |
Ore_g41040 | EMB976 | plastidial splicing factor *(PDM4) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
Solyc03g097000.3.1 | EMB976, Solyc03g097000 | Pentatricopeptide repeat-containing protein At5g27270... | 0.02 | OrthoFinder output from all 47 species | |
Tin_g01225 | EMB976 | plastidial splicing factor *(PDM4) & original description: none | 0.02 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003674 | molecular_function | IEP | HCCA |
MF | GO:0003747 | translation release factor activity | IEP | HCCA |
MF | GO:0003824 | catalytic activity | IEP | HCCA |
MF | GO:0003989 | acetyl-CoA carboxylase activity | IEP | HCCA |
MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | HCCA |
BP | GO:0006082 | organic acid metabolic process | IEP | HCCA |
BP | GO:0006399 | tRNA metabolic process | IEP | HCCA |
BP | GO:0006415 | translational termination | IEP | HCCA |
BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | HCCA |
BP | GO:0006629 | lipid metabolic process | IEP | HCCA |
BP | GO:0006631 | fatty acid metabolic process | IEP | HCCA |
BP | GO:0006633 | fatty acid biosynthetic process | IEP | HCCA |
BP | GO:0006644 | phospholipid metabolic process | IEP | HCCA |
BP | GO:0006650 | glycerophospholipid metabolic process | IEP | HCCA |
MF | GO:0008079 | translation termination factor activity | IEP | HCCA |
BP | GO:0008610 | lipid biosynthetic process | IEP | HCCA |
CC | GO:0009317 | acetyl-CoA carboxylase complex | IEP | HCCA |
BP | GO:0009987 | cellular process | IEP | HCCA |
BP | GO:0016043 | cellular component organization | IEP | HCCA |
BP | GO:0016053 | organic acid biosynthetic process | IEP | HCCA |
MF | GO:0016307 | phosphatidylinositol phosphate kinase activity | IEP | HCCA |
MF | GO:0016421 | CoA carboxylase activity | IEP | HCCA |
MF | GO:0016740 | transferase activity | IEP | HCCA |
MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | HCCA |
MF | GO:0016743 | carboxyl- or carbamoyltransferase activity | IEP | HCCA |
MF | GO:0016874 | ligase activity | IEP | HCCA |
MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | HCCA |
MF | GO:0016885 | ligase activity, forming carbon-carbon bonds | IEP | HCCA |
BP | GO:0019752 | carboxylic acid metabolic process | IEP | HCCA |
BP | GO:0022411 | cellular component disassembly | IEP | HCCA |
BP | GO:0032787 | monocarboxylic acid metabolic process | IEP | HCCA |
MF | GO:0032977 | membrane insertase activity | IEP | HCCA |
BP | GO:0032984 | protein-containing complex disassembly | IEP | HCCA |
BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
BP | GO:0043038 | amino acid activation | IEP | HCCA |
BP | GO:0043039 | tRNA aminoacylation | IEP | HCCA |
BP | GO:0043436 | oxoacid metabolic process | IEP | HCCA |
BP | GO:0043933 | protein-containing complex organization | IEP | HCCA |
BP | GO:0044255 | cellular lipid metabolic process | IEP | HCCA |
BP | GO:0044281 | small molecule metabolic process | IEP | HCCA |
BP | GO:0046394 | carboxylic acid biosynthetic process | IEP | HCCA |
BP | GO:0046486 | glycerolipid metabolic process | IEP | HCCA |
BP | GO:0046488 | phosphatidylinositol metabolic process | IEP | HCCA |
MF | GO:0051536 | iron-sulfur cluster binding | IEP | HCCA |
MF | GO:0051540 | metal cluster binding | IEP | HCCA |
BP | GO:0071840 | cellular component organization or biogenesis | IEP | HCCA |
BP | GO:0072330 | monocarboxylic acid biosynthetic process | IEP | HCCA |
MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | HCCA |
MF | GO:0140104 | molecular carrier activity | IEP | HCCA |
MF | GO:0140597 | protein carrier chaperone | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 307 | 335 |
IPR002885 | Pentatricopeptide_repeat | 656 | 683 |
IPR002885 | Pentatricopeptide_repeat | 515 | 545 |
IPR002885 | Pentatricopeptide_repeat | 561 | 579 |
IPR002885 | Pentatricopeptide_repeat | 692 | 713 |
IPR033443 | PPR_long | 790 | 999 |
IPR002885 | Pentatricopeptide_repeat | 1049 | 1110 |
IPR002885 | Pentatricopeptide_repeat | 442 | 491 |
IPR002885 | Pentatricopeptide_repeat | 373 | 419 |
No external refs found! |