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  5. Adi_g010538

Adi_g010538 (RNR1, ATMTRNASEII, EMB2730)


Aliases : RNR1, ATMTRNASEII, EMB2730

Description : exoribonuclease *(RNase R) & original description: none


Gene families : OG0003116 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003116_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Adi_g010538

Target Alias Description ECC score Gene Family Method Actions
Ala_g06373 RNR1,... exoribonuclease *(RNase R) & original description: none 0.05 OrthoFinder output from all 47 species
Als_g22996 RNR1,... exoribonuclease *(RNase R) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g16173 RNR1,... exoribonuclease *(RNase R) & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene04125.t1 RNR1,... exoribonuclease *(RNase R) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0076.g037820 RNR1,... exoribonuclease *(RNase R) & original description: CDS=121-2559 0.04 OrthoFinder output from all 47 species
Ceric.12G013800.1 RNR1,... exoribonuclease *(RNase R) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.16G035800.1 RNR1,... exoribonuclease *(RNase R) & original description:... 0.04 OrthoFinder output from all 47 species
Dde_g23634 RNR1,... exoribonuclease *(RNase R) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g07835 RNR1,... exoribonuclease *(RNase R) & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01034161001 RNR1,... RNA processing.organelle machineries.ribonuclease... 0.04 OrthoFinder output from all 47 species
LOC_Os01g62440.1 RNR1,... exoribonuclease (RNase R) 0.05 OrthoFinder output from all 47 species
Lfl_g02157 RNR1,... exoribonuclease *(RNase R) & original description: none 0.06 OrthoFinder output from all 47 species
Mp3g07060.1 RNR1,... exoribonuclease (RNase R) 0.05 OrthoFinder output from all 47 species
Ore_g25156 RNR1,... exoribonuclease *(RNase R) & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0038.g011986 RNR1,... exoribonuclease *(RNase R) & original description: CDS=1-2217 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0057.g014701 RNR1,... exoribonuclease *(RNase R) & original description: CDS=112-2388 0.02 OrthoFinder output from all 47 species
Solyc09g010870.4.1 RNR1,... exoribonuclease (RNase R) 0.02 OrthoFinder output from all 47 species
Zm00001e019318_P002 RNR1,... exoribonuclease (RNase R) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0004540 ribonuclease activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000381 regulation of alternative mRNA splicing, via spliceosome IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0032977 membrane insertase activity IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0043484 regulation of RNA splicing IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048024 regulation of mRNA splicing, via spliceosome IEP HCCA
BP GO:0050684 regulation of mRNA processing IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140597 protein carrier chaperone IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1903311 regulation of mRNA metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001900 RNase_II/R 365 661
No external refs found!