1. Home
  2. Species
  3. Equisetum hyemale
  4. Sequence
  5. Ehy_g08674

Ehy_g08674 (SMC5)


Aliases : SMC5

Description : component *(SMC5) of homologous recombination repair Smc5-Smc6 complex & original description: none


Gene families : OG0004405 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004405_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ehy_g08674

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00247730 SMC5,... DNA damage response.DNA repair mechanisms.homologous... 0.03 OrthoFinder output from all 47 species
Cre10.g440300 SMC5 DNA damage response.DNA repair mechanisms.homologous... 0.02 OrthoFinder output from all 47 species
GSVIVT01032195001 SMC5 DNA damage response.DNA repair mechanisms.homologous... 0.03 OrthoFinder output from all 47 species
Lfl_g02324 SMC5 component *(SMC5) of homologous recombination repair... 0.04 OrthoFinder output from all 47 species
MA_10432022g0010 SMC5 Structural maintenance of chromosomes protein 5... 0.03 OrthoFinder output from all 47 species
MA_114320g0010 SMC5 Structural maintenance of chromosomes protein 5... 0.02 OrthoFinder output from all 47 species
Pir_g39085 SMC5 component *(SMC5) of homologous recombination repair... 0.03 OrthoFinder output from all 47 species
Sam_g40490 No alias component *(SMC5) of homologous recombination repair... 0.03 OrthoFinder output from all 47 species
Smo174036 SMC5 DNA damage response.DNA repair mechanisms.homologous... 0.03 OrthoFinder output from all 47 species
Zm00001e013059_P001 SMC5, Zm00001e013059 component SMC5 of homologous recombination repair... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003876 AMP deaminase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006188 IMP biosynthetic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0009123 nucleoside monophosphate metabolic process IEP HCCA
BP GO:0009124 nucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009126 purine nucleoside monophosphate metabolic process IEP HCCA
BP GO:0009127 purine nucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009156 ribonucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009161 ribonucleoside monophosphate metabolic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009167 purine ribonucleoside monophosphate metabolic process IEP HCCA
BP GO:0009168 purine ribonucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019239 deaminase activity IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0032261 purine nucleotide salvage IEP HCCA
BP GO:0032264 IMP salvage IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0043094 cellular metabolic compound salvage IEP HCCA
BP GO:0043101 purine-containing compound salvage IEP HCCA
BP GO:0043173 nucleotide salvage IEP HCCA
BP GO:0046040 IMP metabolic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0047623 adenosine-phosphate deaminase activity IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0106380 purine ribonucleotide salvage IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR003395 RecF/RecN/SMC_N 28 995
No external refs found!