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  5. Sacu_v1.1_s0218.g026101

Sacu_v1.1_s0218.g026101 (Psb27-H1, LPA19)


Aliases : Psb27-H1, LPA19

Description : not classified & original description: CDS=109-834


Gene families : OG0004638 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004638_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0218.g026101
Cluster HCCA: Cluster_32

Target Alias Description ECC score Gene Family Method Actions
Adi_g021002 Psb27-H1, LPA19 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g11340 Psb27-H1, LPA19 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cre02.g073850 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g22123 Psb27-H1, LPA19 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g34104 Psb27-H1, LPA19 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g37645 Psb27-H1, LPA19 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g47626 Psb27-H1, LPA19 not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os03g53640.1 Psb27-H1, LPA19,... Photosystem II D1 precursor processing protein PSB27-H2,... 0.02 OrthoFinder output from all 47 species
Nbi_g04094 Psb27-H1, LPA19 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g30336 Psb27-H1, LPA19 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g11979 Psb27-H1, LPA19 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc09g076030.4.1 Psb27-H1, LPA19,... Photosystem II D1 precursor processing protein PSB27-H2,... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0009523 photosystem II IEA Interproscan
BP GO:0010206 photosystem II repair IEA Interproscan
BP GO:0010207 photosystem II assembly IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
MF GO:0005381 iron ion transmembrane transporter activity IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006612 protein targeting to membrane IEP HCCA
BP GO:0006613 cotranslational protein targeting to membrane IEP HCCA
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP HCCA
BP GO:0006826 iron ion transport IEP HCCA
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034755 iron ion transmembrane transport IEP HCCA
BP GO:0045047 protein targeting to ER IEP HCCA
MF GO:0046915 transition metal ion transmembrane transporter activity IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
BP GO:0070972 protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
InterPro domains Description Start Stop
IPR025585 PSII_Pbs27 48 183
IPR025585 PSII_Pbs27 197 241
No external refs found!