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  5. Sacu_v1.1_s0065.g015941

Sacu_v1.1_s0065.g015941


Description : EC_4.3 carbon-nitrogen lyase & original description: CDS=3403-4650


Gene families : OG0000347 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000347_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0065.g015941
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
Aop_g01236 No alias EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g10391 No alias EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g17986 No alias EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g16357 No alias EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g16461 No alias EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Solyc10g079610.2.1 Solyc10g079610 Protein STRICTOSIDINE SYNTHASE-LIKE 10 OS=Arabidopsis... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0009058 biosynthetic process IEA Interproscan
MF GO:0016844 strictosidine synthase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0005542 folic acid binding IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0031406 carboxylic acid binding IEP HCCA
MF GO:0033218 amide binding IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
CC GO:0035145 exon-exon junction complex IEP HCCA
MF GO:0043177 organic acid binding IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
MF GO:0072341 modified amino acid binding IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR007275 YTH_domain 350 492
IPR018119 Strictosidine_synth_cons-reg 194 273
No external refs found!