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  5. Sacu_v1.1_s0034.g011198

Sacu_v1.1_s0034.g011198


Description : circadian clock factor *(REVEILLE) & original description: CDS=262-1230


Gene families : OG0000435 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000435_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0034.g011198

Target Alias Description ECC score Gene Family Method Actions
AT1G01060 LHY1, LHY Homeodomain-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT2G46830 CCA1 circadian clock associated 1 0.03 OrthoFinder output from all 47 species
AT3G09600 No alias Homeodomain-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G17300 RVE1 Homeodomain-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G37260 RVE2, CIR1 Homeodomain-like superfamily protein 0.02 OrthoFinder output from all 47 species
Aev_g37665 RVE1 circadian clock core oscillator protein *(LHY/CCA1) &... 0.03 OrthoFinder output from all 47 species
Als_g15171 RVE1 circadian clock core oscillator protein *(LHY/CCA1) &... 0.03 OrthoFinder output from all 47 species
Als_g33302 No alias transcription factor *(REVEILLE) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g62177 RVE1 transcription factor *(REVEILLE) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g33824 No alias circadian clock factor *(REVEILLE) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g33458 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0065.g035858 RVE1 transcription factor *(REVEILLE) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.07G057200.1 RVE1, Ceric.07G057200 transcription factor *(REVEILLE) & original description:... 0.02 OrthoFinder output from all 47 species
Dac_g06441 No alias transcription factor *(REVEILLE) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08959 RVE1 transcription factor *(REVEILLE) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g02839 RVE2, CIR1 transcription factor *(REVEILLE) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01025544001 No alias Multi-process regulation.circadian clock.evening element... 0.03 OrthoFinder output from all 47 species
Len_g20787 No alias circadian clock factor *(REVEILLE) & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g29371 No alias circadian clock factor *(REVEILLE) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g03237 RVE1 transcription factor *(REVEILLE) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g11968 No alias transcription factor *(REVEILLE) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g42013 RVE2, CIR1 transcription factor *(REVEILLE) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0053.g014166 RVE2, CIR1 transcription factor *(REVEILLE) & original description:... 0.03 OrthoFinder output from all 47 species
Smo166821 No alias Multi-process regulation.circadian clock.core oscillator... 0.02 OrthoFinder output from all 47 species
Zm00001e037757_P001 Zm00001e037757 transcription factor (MYB-related). REVEILLE circadian... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0004420 hydroxymethylglutaryl-CoA reductase (NADPH) activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004620 phospholipase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0008081 phosphoric diester hydrolase activity IEP HCCA
BP GO:0015936 coenzyme A metabolic process IEP HCCA
MF GO:0016298 lipase activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0033865 nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP HCCA
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP HCCA
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
MF GO:0050290 sphingomyelin phosphodiesterase D activity IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
InterPro domains Description Start Stop
IPR001005 SANT/Myb 41 86
No external refs found!