Sacu_v1.1_s0028.g009893 (ICU4, ATHB15, ATHB-15, CNA)

Aliases : ICU4, ATHB15, ATHB-15, CNA

Description : component *(NF-YA) of NF-Y transcription factor complex & original description: CDS=60-1742

Gene families : OG0000446 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000446_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sacu_v1.1_s0028.g009893

Target	Alias	Description	ECC score	Gene Family Method
Adi_g060752	PHB-1D, ATHB-14,...	transcriptional co-regulator *(ZPR) & original description: none	0.04	OrthoFinder output from all 47 species
Aob_g22190	ICU4, ATHB15,...	HD-ZIP III-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g22008	HB-8, ATHB8, ATHB-8	transcriptional co-regulator *(ZPR) & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g02849	ICU4, ATHB15,...	transcriptional co-regulator *(ZPR) & original description: none	0.03	OrthoFinder output from all 47 species
Smo77000	PHB-1D, ATHB-14,...	RNA biosynthesis.transcriptional activation.HB...	0.02	OrthoFinder output from all 47 species
Zm00001e000073_P001	IFL1, IFL, REV,...	transcription factor (HD-ZIP III)	0.02	OrthoFinder output from all 47 species
Zm00001e039093_P002	IFL1, IFL, REV,...	transcription factor (HD-ZIP III)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008289	lipid binding	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0001181	RNA polymerase I general transcription initiation factor activity	IEP	HCCA
BP	GO:0002097	tRNA wobble base modification	IEP	HCCA
BP	GO:0002098	tRNA wobble uridine modification	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0005049	nuclear export signal receptor activity	IEP	HCCA
BP	GO:0006352	DNA-templated transcription initiation	IEP	HCCA
BP	GO:0006361	transcription initiation at RNA polymerase I promoter	IEP	HCCA
BP	GO:0006400	tRNA modification	IEP	HCCA
BP	GO:0008033	tRNA processing	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
MF	GO:0019899	enzyme binding	IEP	HCCA
MF	GO:0031267	small GTPase binding	IEP	HCCA
CC	GO:0033588	elongator holoenzyme complex	IEP	HCCA
MF	GO:0051020	GTPase binding	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0140104	molecular carrier activity	IEP	HCCA
MF	GO:0140142	nucleocytoplasmic carrier activity	IEP	HCCA
MF	GO:0140223	general transcription initiation factor activity	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001289	NFYA	164	219
IPR002913	START_lipid-bd_dom	64	144
IPR013978	MEKHLA	432	574
IPR002885	Pentatricopeptide_repeat	69	115
IPR002885	Pentatricopeptide_repeat	237	285
IPR002885	Pentatricopeptide_repeat	174	199

External Links

No external refs found!