Sacu_v1.1_s0002.g000799

Description : not classified & original description: CDS=1-519

Gene families : OG0002243 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002243_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sacu_v1.1_s0002.g000799

Target	Alias	Description	ECC score	Gene Family Method
AT3G54210	No alias	Ribosomal protein L17 family protein	0.05	OrthoFinder output from all 47 species
Ala_g36982	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Als_g08091	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Als_g32904	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Aspi01Gene18280.t1	Aspi01Gene18280	component *(bL17c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Azfi_s0132.g049286	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Cba_g00454	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Ceric.31G010800.1	Ceric.31G010800	component *(bL17c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Cre02.g108850	No alias	Protein biosynthesis.organelle translation...	0.03	OrthoFinder output from all 47 species
Dac_g01223	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Dcu_g23921	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Dde_g06743	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Ehy_g03225	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
LOC_Os03g60100.1	LOC_Os03g60100	component psRPL17 of large ribosomal subunit proteome	0.02	OrthoFinder output from all 47 species
Len_g00984	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Lfl_g00441	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Mp8g05860.1	No alias	component psRPL17 of large ribosomal subunit proteome	0.06	OrthoFinder output from all 47 species
Msp_g20377	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Pir_g36278	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Pp3c13_21730V3.1	Pp3c13_21730	Ribosomal protein L17 family protein	0.01	OrthoFinder output from all 47 species
Sam_g11817	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Spa_g04290	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Spa_g04291	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004180	carboxypeptidase activity	IEP	HCCA
MF	GO:0004185	serine-type carboxypeptidase activity	IEP	HCCA
MF	GO:0005216	monoatomic ion channel activity	IEP	HCCA
MF	GO:0005261	monoatomic cation channel activity	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006488	dolichol-linked oligosaccharide biosynthetic process	IEP	HCCA
BP	GO:0006490	oligosaccharide-lipid intermediate biosynthetic process	IEP	HCCA
BP	GO:0006754	ATP biosynthetic process	IEP	HCCA
MF	GO:0008238	exopeptidase activity	IEP	HCCA
BP	GO:0009142	nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009145	purine nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009152	purine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009201	ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009206	purine ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009522	photosystem I	IEP	HCCA
CC	GO:0009523	photosystem II	IEP	HCCA
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	HCCA
MF	GO:0015078	proton transmembrane transporter activity	IEP	HCCA
MF	GO:0015252	proton channel activity	IEP	HCCA
BP	GO:0015979	photosynthesis	IEP	HCCA
BP	GO:0015986	proton motive force-driven ATP synthesis	IEP	HCCA
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	IEP	HCCA
MF	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
CC	GO:0019898	extrinsic component of membrane	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
CC	GO:0033178	proton-transporting two-sector ATPase complex, catalytic domain	IEP	HCCA
CC	GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
MF	GO:0046527	glucosyltransferase activity	IEP	HCCA
MF	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism	IEP	HCCA
MF	GO:0070008	serine-type exopeptidase activity	IEP	HCCA
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA
MF	GO:0106073	dolichyl pyrophosphate Glc2Man9GlcNAc2 alpha-1,2-glucosyltransferase activity	IEP	HCCA
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA
CC	GO:1990204	oxidoreductase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000456	Ribosomal_L17	24	97

External Links

No external refs found!

Sacu_v1.1_s0002.g000799

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation