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  5. Sacu_v1.1_s0001.g000401

Sacu_v1.1_s0001.g000401 (LEP)


Aliases : LEP

Description : subgroup ERF-VIII transcription factor & original description: CDS=1-2205


Gene families : OG0000003 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0001.g000401
Cluster HCCA: Cluster_67

Target Alias Description ECC score Gene Family Method Actions
Adi_g015126 DEAR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g041740 DREB2A, DREB2 subgroup ERF-IV/DREB2 transcription factor & original... 0.02 OrthoFinder output from all 47 species
Adi_g053440 ATERF4, RAP2.5,... subgroup ERF-VIII transcription factor & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene05419.t1 ORA47, Aspi01Gene05419 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene05426.t1 ORA47, Aspi01Gene05426 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene05675.t2 Aspi01Gene05675 subgroup ERF-III transcription factor & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene11862.t1 ATERF12, ERF12,... subgroup ERF-VIII transcription factor & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene18664.t1 TINY2, Aspi01Gene18664 subgroup ERF-III transcription factor & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene30897.t1 ERF-1, ATERF-1,... subgroup ERF-IX transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene51269.t1 TINY2, Aspi01Gene51269 subgroup ERF-III transcription factor & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene56619.t1 RAP2.1, Aspi01Gene56619 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene56620.t1 RAP2.9, DEAR5,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene56622.t1 RAP2.9, DEAR5,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene65341.t1 Aspi01Gene65341 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0040.g026640 ERF-1, ATERF-1 subgroup ERF-IX transcription factor & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0070.g036708 No alias not classified & original description: CDS=1-939 0.03 OrthoFinder output from all 47 species
Ceric.1Z027000.1 ERF110, Ceric.1Z027000 not classified & original description: pacid=50632868... 0.03 OrthoFinder output from all 47 species
Ceric.34G045400.1 DREB2A, DREB2,... subgroup ERF-IV/DREB2 transcription factor & original... 0.04 OrthoFinder output from all 47 species
Dcu_g14322 RAP2.2 transcription factor component *(HRE/RAP2.12) of... 0.03 OrthoFinder output from all 47 species
Dde_g12767 ATERF-9, ERF9, ATERF9 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g01023 ATERF3, ERF3 subgroup ERF-VIII transcription factor & original... 0.02 OrthoFinder output from all 47 species
Gb_01213 No alias transcription factor (DREB) 0.03 OrthoFinder output from all 47 species
Mp5g22160.1 ERF110 Ethylene-responsive transcription factor ERF112... 0.02 OrthoFinder output from all 47 species
Ore_g15422 TINY2 subgroup ERF-III transcription factor & original... 0.02 OrthoFinder output from all 47 species
Pir_g49983 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pnu_g12670 No alias subgroup ERF-II transcription factor *(ERF16/17/18) &... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002116 DREB2A, DREB2 subgroup ERF-IV/DREB2 transcription factor & original... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004888 No alias not classified & original description: CDS=1-1152 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0036.g011575 DEAR1, CEJ1, ATERF#011 not classified & original description: CDS=1-717 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0040.g012398 DEAR1, CEJ1, ATERF#011 not classified & original description: CDS=1-1134 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0042.g012659 No alias not classified & original description: CDS=1-1455 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0061.g015347 RAP2.6 subgroup ERF-X transcription factor & original... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0225.g026324 ERF110 not classified & original description: CDS=572-2401 0.05 OrthoFinder output from all 47 species
Solyc03g005520.1.1 ERF1, ATERF1,... transcription factor (ERF) 0.02 OrthoFinder output from all 47 species
Solyc05g051200.1.1 ERF1, ATERF1,... transcription factor (ERF) 0.02 OrthoFinder output from all 47 species
Zm00001e015312_P001 ERF-1, ATERF-1,... transcription factor (ERF) 0.02 OrthoFinder output from all 47 species
Zm00001e024669_P001 ERF110, Zm00001e024669 transcription factor (ERF) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0004673 protein histidine kinase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
MF GO:0008519 ammonium transmembrane transporter activity IEP HCCA
CC GO:0009360 DNA polymerase III complex IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0016881 acid-amino acid ligase activity IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
CC GO:0042575 DNA polymerase complex IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
BP GO:0072488 ammonium transmembrane transport IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140299 small molecule sensor activity IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR001471 AP2/ERF_dom 220 269
No external refs found!