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  5. Azfi_s0283.g063046

Azfi_s0283.g063046 (YAO)


Aliases : YAO

Description : SSU processome assembly factor *(RRP9/YAO1) & original description: CDS=120-1973


Gene families : OG0006246 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006246_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0283.g063046
Cluster HCCA: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00155p00078230 EMB2271,... Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
AT4G05410 YAO Transducin/WD40 repeat-like superfamily protein 0.07 OrthoFinder output from all 47 species
Ala_g12212 EMB2271 SSU processome assembly factor *(RRP9/YAO1) & original... 0.05 OrthoFinder output from all 47 species
Aop_g07802 EMB2271 SSU processome assembly factor *(RRP9/YAO1) & original... 0.03 OrthoFinder output from all 47 species
Ceric.23G029700.1 EMB2271, Ceric.23G029700 SSU processome assembly factor *(RRP9/YAO1) & original... 0.08 OrthoFinder output from all 47 species
Cre06.g278175 EMB2271 Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
Dcu_g01492 EMB2271 SSU processome assembly factor *(RRP9/YAO1) & original... 0.04 OrthoFinder output from all 47 species
GSVIVT01021618001 EMB2271 Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 OrthoFinder output from all 47 species
Gb_41592 YAO SSU processome assembly factor (RRP9/YAO1) 0.03 OrthoFinder output from all 47 species
LOC_Os03g42770.1 YAO, LOC_Os03g42770 SSU processome assembly factor (RRP9/YAO1) 0.04 OrthoFinder output from all 47 species
MA_10426194g0010 EMB2271 SSU processome assembly factor (RRP9/YAO1) 0.03 OrthoFinder output from all 47 species
Mp8g03800.1 EMB2271 SSU processome assembly factor (RRP9/YAO1) 0.05 OrthoFinder output from all 47 species
Ore_g18683 EMB2271 SSU processome assembly factor *(RRP9/YAO1) & original... 0.03 OrthoFinder output from all 47 species
Solyc02g069770.3.1 EMB2271, Solyc02g069770 SSU processome assembly factor (RRP9/YAO1) 0.05 OrthoFinder output from all 47 species
Spa_g18346 EMB2271 SSU processome assembly factor *(RRP9/YAO1) & original... 0.03 OrthoFinder output from all 47 species
Tin_g17456 EMB2271 SSU processome assembly factor *(RRP9/YAO1) & original... 0.03 OrthoFinder output from all 47 species
Zm00001e005033_P001 YAO, Zm00001e005033 SSU processome assembly factor (RRP9/YAO1) 0.05 OrthoFinder output from all 47 species
Zm00001e012407_P002 EMB2271, Zm00001e012407 SSU processome assembly factor (RRP9/YAO1) 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0001181 RNA polymerase I general transcription initiation factor activity IEP HCCA
MF GO:0004819 glutamine-tRNA ligase activity IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
BP GO:0006361 transcription initiation at RNA polymerase I promoter IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006425 glutaminyl-tRNA aminoacylation IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140223 general transcription initiation factor activity IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 466 501
IPR001680 WD40_repeat 353 378
IPR001680 WD40_repeat 383 420
IPR001680 WD40_repeat 427 461
No external refs found!