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  5. Azfi_s0236.g059546

Azfi_s0236.g059546 (XPO1A, HIT2, ATCRM1,...)


Aliases : XPO1A, HIT2, ATCRM1, XPO1, ATXPO1

Description : nucleocytoplasmic export karyopherin *(XPO1) & original description: CDS=297-3464


Gene families : OG0003383 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003383_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0236.g059546

Target Alias Description ECC score Gene Family Method Actions
Ore_g25272 XPO1A, HIT2,... nucleocytoplasmic export karyopherin *(XPO1) & original... 0.02 OrthoFinder output from all 47 species
Sam_g40475 No alias nucleocytoplasmic export karyopherin *(XPO1) & original... 0.02 OrthoFinder output from all 47 species
Solyc03g096920.3.1 XPO1A, HIT2,... XPO1 nucleocytoplasmic export karyopherin 0.04 OrthoFinder output from all 47 species
Zm00001e006430_P001 XPO1A, HIT2,... XPO1 nucleocytoplasmic export karyopherin 0.02 OrthoFinder output from all 47 species
Zm00001e011624_P002 XPO1A, HIT2,... XPO1 nucleocytoplasmic export karyopherin 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005049 nuclear export signal receptor activity IEA Interproscan
BP GO:0006886 intracellular protein transport IEA Interproscan
MF GO:0031267 small GTPase binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006771 riboflavin metabolic process IEP HCCA
BP GO:0009231 riboflavin biosynthetic process IEP HCCA
CC GO:0009349 riboflavin synthase complex IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0042726 flavin-containing compound metabolic process IEP HCCA
BP GO:0042727 flavin-containing compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR041123 CRM1_repeat 321 356
IPR040485 XPO1_repeat_3 467 517
IPR013598 Exportin-1/Importin-b-like 114 257
IPR014877 XPO1_C_dom 691 1013
IPR001494 Importin-beta_N 36 102
IPR041235 Exp1_repeat_2 387 454
No external refs found!