1. Home
  2. Species
  3. Azolla filiculoides
  4. Sequence
  5. Azfi_s0168.g054578

Azfi_s0168.g054578


Description : not classified & original description: CDS=199-2913


Gene families : OG0007936 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007936_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0168.g054578
Cluster HCCA: Cluster_71

Target Alias Description ECC score Gene Family Method Actions
Ehy_g03955 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_37339 No alias Pentatricopeptide repeat-containing protein At1g76280... 0.05 OrthoFinder output from all 47 species
Mp7g13850.1 No alias Pentatricopeptide repeat-containing protein At1g76280... 0.02 OrthoFinder output from all 47 species
Nbi_g07630 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0074.g017206 No alias not classified & original description: CDS=106-2811 0.03 OrthoFinder output from all 47 species
Sam_g16318 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc04g082320.3.1 Solyc04g082320 Pentatricopeptide repeat-containing protein At1g76280... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0003922 GMP synthase (glutamine-hydrolyzing) activity IEP HCCA
MF GO:0004177 aminopeptidase activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP HCCA
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP HCCA
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006177 GMP biosynthetic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
MF GO:0008175 tRNA methyltransferase activity IEP HCCA
MF GO:0008235 metalloexopeptidase activity IEP HCCA
BP GO:0009123 nucleoside monophosphate metabolic process IEP HCCA
BP GO:0009124 nucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009126 purine nucleoside monophosphate metabolic process IEP HCCA
BP GO:0009127 purine nucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009156 ribonucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009161 ribonucleoside monophosphate metabolic process IEP HCCA
BP GO:0009167 purine ribonucleoside monophosphate metabolic process IEP HCCA
BP GO:0009168 purine ribonucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
MF GO:0030145 manganese ion binding IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0046037 GMP metabolic process IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
MF GO:0070006 metalloaminopeptidase activity IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR033443 PPR_long 652 788
IPR002885 Pentatricopeptide_repeat 101 122
IPR002885 Pentatricopeptide_repeat 206 232
IPR002885 Pentatricopeptide_repeat 527 556
IPR002885 Pentatricopeptide_repeat 421 446
IPR002885 Pentatricopeptide_repeat 452 501
No external refs found!