Ehy_g03858


Description : polynucleotide kinase involved in ITS2 rRNA removal *(GRC3) & original description: none


Gene families : OG0006547 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006547_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ehy_g03858

Target Alias Description ECC score Gene Family Method Actions
Aob_g20732 No alias polynucleotide kinase involved in ITS2 rRNA removal... 0.04 OrthoFinder output from all 47 species
Aop_g11094 No alias polynucleotide kinase involved in ITS2 rRNA removal... 0.02 OrthoFinder output from all 47 species
Cre03.g168350 No alias Polynucleotide 5-hydroxyl-kinase NOL9 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Dac_g21136 No alias polynucleotide kinase involved in ITS2 rRNA removal... 0.03 OrthoFinder output from all 47 species
Len_g11686 No alias polynucleotide kinase involved in ITS2 rRNA removal... 0.04 OrthoFinder output from all 47 species
MA_132031g0010 No alias Polynucleotide 5-hydroxyl-kinase NOL9 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Sam_g27409 No alias polynucleotide kinase involved in ITS2 rRNA removal... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP HCCA
BP GO:0002100 tRNA wobble adenosine to inosine editing IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004000 adenosine deaminase activity IEP HCCA
MF GO:0004357 glutamate-cysteine ligase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005049 nuclear export signal receptor activity IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0006382 adenosine to inosine editing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006575 cellular modified amino acid metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008251 tRNA-specific adenosine deaminase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016553 base conversion or substitution editing IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016881 acid-amino acid ligase activity IEP HCCA
MF GO:0019239 deaminase activity IEP HCCA
MF GO:0032182 ubiquitin-like protein binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
BP GO:0042398 cellular modified amino acid biosynthetic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043130 ubiquitin binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140142 nucleocytoplasmic carrier activity IEP HCCA
InterPro domains Description Start Stop
IPR032319 CLP1_P 164 367
No external refs found!