Azfi_s0065.g035985


Description : scaffold component *(NOT1) of mRNA deadenylation CCR4-NOT complex & original description: CDS=1-7050


Gene families : OG0002046 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002046_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0065.g035985

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00106p00133350 evm_27.TU.AmTr_v1... RNA processing.RNA decay.deadenylation-dependent... 0.07 OrthoFinder output from all 47 species
AT1G02080 No alias transcription regulators 0.08 OrthoFinder output from all 47 species
Adi_g055874 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
Aob_g22134 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.05 OrthoFinder output from all 47 species
Aop_g06241 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
Cba_g12926 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
Ceric.34G056500.1 Ceric.34G056500 scaffold component *(NOT1) of mRNA deadenylation... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000767.19 No alias RNA processing.RNA decay.deadenylation-dependent... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000767.20 No alias No description available 0.03 OrthoFinder output from all 47 species
Dcu_g02066 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.04 OrthoFinder output from all 47 species
GSVIVT01000874001 No alias RNA processing.RNA decay.deadenylation-dependent... 0.06 OrthoFinder output from all 47 species
GSVIVT01018721001 No alias RNA processing.RNA decay.deadenylation-dependent... 0.07 OrthoFinder output from all 47 species
Gb_12251 No alias component NOT1 of mRNA deadenylation CCR4-NOT complex 0.05 OrthoFinder output from all 47 species
LOC_Os10g40780.1 LOC_Os10g40780 component NOT1 of mRNA deadenylation CCR4-NOT complex 0.05 OrthoFinder output from all 47 species
Len_g12091 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.05 OrthoFinder output from all 47 species
Lfl_g10188 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.04 OrthoFinder output from all 47 species
MA_100304g0010 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
MA_1121588g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_42843g0010 No alias component NOT1 of mRNA deadenylation CCR4-NOT complex 0.05 OrthoFinder output from all 47 species
Mp3g11860.1 No alias component NOT1 of mRNA deadenylation CCR4-NOT complex 0.02 OrthoFinder output from all 47 species
Msp_g00723 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.04 OrthoFinder output from all 47 species
Ore_g16116 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0261.g026893 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.04 OrthoFinder output from all 47 species
Sam_g40588 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.07 OrthoFinder output from all 47 species
Smo440060 No alias RNA processing.RNA decay.deadenylation-dependent... 0.04 OrthoFinder output from all 47 species
Solyc01g090780.3.1 Solyc01g090780 component NOT1 of mRNA deadenylation CCR4-NOT complex 0.06 OrthoFinder output from all 47 species
Tin_g16815 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
Zm00001e000031_P001 Zm00001e000031 component NOT1 of mRNA deadenylation CCR4-NOT complex 0.05 OrthoFinder output from all 47 species
Zm00001e039114_P001 Zm00001e039114 component NOT1 of mRNA deadenylation CCR4-NOT complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR032194 CNOT1_HEAT 507 654
IPR007196 CCR4-Not_Not1_C 2044 2323
IPR032191 CNOT1_CAF1_bind 1014 1100
IPR032193 CNOT1_TTP_bind 690 854
IPR024557 CNOT1_dom_4 1316 1457
No external refs found!