Azfi_s0043.g027097 (CHR5)

Aliases : CHR5

Description : component *(CHR5) of SAGA transcription co-activator complex & original description: CDS=1-4125

Gene families : OG0000102 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000102_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Azfi_s0043.g027097
Cluster	HCCA: Cluster_78

Target	Alias	Description	ECC score	Gene Family Method
Aev_g09087	ATCHR12	SMARCA component *(SYD/BRM/MINU) & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g23375	CHR01, CHR1,...	chromatin remodeling factor *(DDM1) & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene14150.t2	CHR11, Aspi01Gene14150	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Cre12.g508150	CHR11	Chromatin organisation.chromatin remodeling...	0.02	OrthoFinder output from all 47 species
Dde_g10991	PKR1, CHR4	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Mp5g24460.1	PKL, GYM, CHR6,...	chromatin remodeling factor (Chd3/Mi-2)	0.02	OrthoFinder output from all 47 species
Msp_g13206	PKL, GYM, CHR6,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Solyc08g029130.3.1	PKL, GYM, CHR6,...	chromatin remodeling factor (Chd3/Mi-2)	0.03	OrthoFinder output from all 47 species
Zm00001e010908_P001	CHR5, Zm00001e010908	Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEA	Interproscan
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004134	4-alpha-glucanotransferase activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
BP	GO:0006325	chromatin organization	IEP	HCCA
BP	GO:0006334	nucleosome assembly	IEP	HCCA
BP	GO:0006338	chromatin remodeling	IEP	HCCA
BP	GO:0006457	protein folding	IEP	HCCA
MF	GO:0030246	carbohydrate binding	IEP	HCCA
MF	GO:0030247	polysaccharide binding	IEP	HCCA
BP	GO:0034728	nucleosome organization	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
MF	GO:0044183	protein folding chaperone	IEP	HCCA
MF	GO:0051082	unfolded protein binding	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0065004	protein-DNA complex assembly	IEP	HCCA
BP	GO:0071824	protein-DNA complex subunit organization	IEP	HCCA
MF	GO:0140662	ATP-dependent protein folding chaperone	IEP	HCCA
MF	GO:2001070	starch binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR025260	CHD1-like_C	1162	1255
IPR000330	SNF2_N	241	510
IPR023780	Chromo_domain	15	75
IPR001650	Helicase_C	539	652

External Links

No external refs found!