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  5. Ceric.31G022500.1

Ceric.31G022500.1 (emb1507, Ceric.31G022500)


Aliases : emb1507, Ceric.31G022500

Description : RNA helicase *(Brr2) & original description: pacid=50574483 polypeptide=Ceric.31G022500.1.p locus=Ceric.31G022500 ID=Ceric.31G022500.1.v2.1 annot-version=v2.1


Gene families : OG0001175 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001175_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.31G022500.1
Cluster HCCA: Cluster_142

Target Alias Description ECC score Gene Family Method Actions
Adi_g117139 emb1507 RNA helicase *(Brr2) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g01991 emb1507 RNA helicase *(Brr2) & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g40053 emb1507 RNA helicase *(Brr2) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g05989 emb1507 RNA helicase *(Brr2) & original description: none 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000865.28 emb1507 DExH-box ATP-dependent RNA helicase DExH12... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000865.29 emb1507 DExH-box ATP-dependent RNA helicase DExH12... 0.02 OrthoFinder output from all 47 species
Cre17.g744147 emb1507 RNA processing.RNA splicing.spliceosome... 0.03 OrthoFinder output from all 47 species
Dac_g02389 emb1507 RNA helicase *(Brr2) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g12876 emb1507 RNA helicase *(Brr2) & original description: none 0.07 OrthoFinder output from all 47 species
GSVIVT01010769001 emb1507 DExH-box ATP-dependent RNA helicase DExH12... 0.05 OrthoFinder output from all 47 species
LOC_Os02g01740.1 emb1507, LOC_Os02g01740 RNA helicase (Brr2) 0.04 OrthoFinder output from all 47 species
Lfl_g05048 emb1507 RNA helicase *(Brr2) & original description: none 0.04 OrthoFinder output from all 47 species
Mp1g06890.1 emb1507 RNA helicase (Brr2) 0.02 OrthoFinder output from all 47 species
Sam_g18045 No alias RNA helicase *(Brr2) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc06g082100.4.1 emb1507, Solyc06g082100 RNA helicase (Brr2) 0.03 OrthoFinder output from all 47 species
Spa_g52342 emb1507 RNA helicase *(Brr2) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e035676_P001 emb1507, Zm00001e035676 RNA helicase (Brr2) 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
BP GO:0002097 tRNA wobble base modification IEP HCCA
BP GO:0002098 tRNA wobble uridine modification IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
MF GO:0031369 translation initiation factor binding IEP HCCA
BP GO:0032259 methylation IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0033588 elongator holoenzyme complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR041094 Brr2_helicase_PWI 267 376
IPR004179 Sec63-dom 1005 1307
IPR011545 DEAD/DEAH_box_helicase_dom 506 681
IPR004179 Sec63-dom 1838 2155
IPR011545 DEAD/DEAH_box_helicase_dom 1352 1520
IPR001650 Helicase_C 738 881
No external refs found!