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Aliases : Ceric.28G060200
Description : pre-mRNA splicing factor *(SF1) & original description: pacid=50570590 polypeptide=Ceric.28G060200.1.p locus=Ceric.28G060200 ID=Ceric.28G060200.1.v2.1 annot-version=v2.1
Gene families : OG0000568 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000568_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00024p00180690 | evm_27.TU.AmTr_v1... | Splicing factor-like protein 1 OS=Arabidopsis thaliana | 0.05 | OrthoFinder output from all 47 species | |
| Adi_g014374 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g078788 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g13487 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Als_g14038 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Als_g15565 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g52145 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Aob_g07393 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aop_g11258 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0073.g037110 | No alias | pre-mRNA splicing factor *(SF1) & original description:... | 0.04 | OrthoFinder output from all 47 species | |
| Cba_g01316 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Cba_g27472 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g78771 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.06G040400.1 | Ceric.06G040400 | pre-mRNA splicing factor *(SF1) & original description:... | 0.03 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00001154.10 | No alias | RNA processing.RNA splicing.U2-type-intron-specific... | 0.02 | OrthoFinder output from all 47 species | |
| Dac_g28636 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g08280 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g09594 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dcu_g16800 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g04206 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Lfl_g04920 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Lfl_g29785 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| MA_8555g0010 | No alias | no hits & (original description: none) | 0.05 | OrthoFinder output from all 47 species | |
| Msp_g15293 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g19076 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g05872 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g18845 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g25454 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g18388 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pnu_g11449 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g04689 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g11416 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g55171 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g59343 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0002.g001254 | No alias | pre-mRNA splicing factor *(SF1) & original description:... | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0146.g023057 | No alias | pre-mRNA splicing factor *(SF1) & original description:... | 0.03 | OrthoFinder output from all 47 species | |
| Smo73732 | No alias | RNA processing.RNA splicing.U2-type-intron-specific... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc01g006010.3.1 | Solyc01g006010 | no hits & (original description: none) | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g25982 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g46185 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g07779 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Tin_g09957 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Tin_g14069 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e008383_P001 | Zm00001e008383 | pre-mRNA splicing factor (SF1) | 0.05 | OrthoFinder output from all 47 species | |
| Zm00001e040741_P001 | Zm00001e040741 | pre-mRNA splicing factor (SF1) | 0.07 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003723 | RNA binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000786 | nucleosome | IEP | HCCA |
| MF | GO:0003724 | RNA helicase activity | IEP | HCCA |
| MF | GO:0004386 | helicase activity | IEP | HCCA |
| MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | HCCA |
| MF | GO:0005524 | ATP binding | IEP | HCCA |
| CC | GO:0005634 | nucleus | IEP | HCCA |
| BP | GO:0006260 | DNA replication | IEP | HCCA |
| BP | GO:0006325 | chromatin organization | IEP | HCCA |
| BP | GO:0006334 | nucleosome assembly | IEP | HCCA |
| BP | GO:0006338 | chromatin remodeling | IEP | HCCA |
| BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | HCCA |
| MF | GO:0008186 | ATP-dependent activity, acting on RNA | IEP | HCCA |
| BP | GO:0009892 | negative regulation of metabolic process | IEP | HCCA |
| BP | GO:0010605 | negative regulation of macromolecule metabolic process | IEP | HCCA |
| BP | GO:0010629 | negative regulation of gene expression | IEP | HCCA |
| MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | HCCA |
| MF | GO:0019899 | enzyme binding | IEP | HCCA |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
| BP | GO:0031047 | RNA-mediated gene silencing | IEP | HCCA |
| MF | GO:0031267 | small GTPase binding | IEP | HCCA |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
| CC | GO:0032993 | protein-DNA complex | IEP | HCCA |
| BP | GO:0034728 | nucleosome organization | IEP | HCCA |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
| BP | GO:0043038 | amino acid activation | IEP | HCCA |
| BP | GO:0043039 | tRNA aminoacylation | IEP | HCCA |
| CC | GO:0043227 | membrane-bounded organelle | IEP | HCCA |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | HCCA |
| CC | GO:0044815 | DNA packaging complex | IEP | HCCA |
| BP | GO:0048519 | negative regulation of biological process | IEP | HCCA |
| MF | GO:0051020 | GTPase binding | IEP | HCCA |
| BP | GO:0065004 | protein-DNA complex assembly | IEP | HCCA |
| BP | GO:0071824 | protein-DNA complex subunit organization | IEP | HCCA |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | HCCA |
| MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | HCCA |
| MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
| No external refs found! |