Ceric.23G016700.1 (Ceric.23G016700)

Aliases : Ceric.23G016700

Description : uridine 5-carboxymethylaminomethyl modification enzyme *(TrmE) & original description: pacid=50610662 polypeptide=Ceric.23G016700.1.p locus=Ceric.23G016700 ID=Ceric.23G016700.1.v2.1 annot-version=v2.1

Gene families : OG0006066 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006066_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ceric.23G016700.1

Target	Alias	Description	ECC score	Gene Family Method
AT1G78010	No alias	tRNA modification GTPase, putative	0.03	OrthoFinder output from all 47 species
Aev_g30631	No alias	uridine 5-carboxymethylaminomethyl modification enzyme...	0.03	OrthoFinder output from all 47 species
Cba_g51488	No alias	uridine 5-carboxymethylaminomethyl modification enzyme...	0.03	OrthoFinder output from all 47 species
Ehy_g02615	No alias	uridine 5-carboxymethylaminomethyl modification enzyme...	0.05	OrthoFinder output from all 47 species
GSVIVT01008990001	No alias	No description available	0.03	OrthoFinder output from all 47 species
Len_g00666	No alias	uridine 5-carboxymethylaminomethyl modification enzyme...	0.03	OrthoFinder output from all 47 species
Lfl_g08160	No alias	uridine 5-carboxymethylaminomethyl modification enzyme...	0.04	OrthoFinder output from all 47 species
MA_10428042g0020	No alias	no hits & (original description: none)	0.01	OrthoFinder output from all 47 species
Ore_g16794	No alias	uridine 5-carboxymethylaminomethyl modification enzyme...	0.03	OrthoFinder output from all 47 species
Pir_g06555	No alias	uridine 5-carboxymethylaminomethyl modification enzyme...	0.02	OrthoFinder output from all 47 species
Ppi_g02715	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g50485	No alias	uridine 5-carboxymethylaminomethyl modification enzyme...	0.02	OrthoFinder output from all 47 species
Zm00001e022362_P004	Zm00001e022362	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003747	translation release factor activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0004518	nuclease activity	IEP	HCCA
MF	GO:0004527	exonuclease activity	IEP	HCCA
MF	GO:0004540	ribonuclease activity	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
MF	GO:0004817	cysteine-tRNA ligase activity	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006415	translational termination	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006423	cysteinyl-tRNA aminoacylation	IEP	HCCA
MF	GO:0008079	translation termination factor activity	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
MF	GO:0008408	3'-5' exonuclease activity	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
BP	GO:0022411	cellular component disassembly	IEP	HCCA
MF	GO:0031072	heat shock protein binding	IEP	HCCA
BP	GO:0032984	protein-containing complex disassembly	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
MF	GO:0044183	protein folding chaperone	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
MF	GO:0051082	unfolded protein binding	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
BP	GO:0110102	ribulose bisphosphate carboxylase complex assembly	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR018948	GTP-bd_TrmE_N	101	229
IPR006073	GTP-bd	326	446
IPR025867	MnmE_helical	232	567

External Links

No external refs found!

Ceric.23G016700.1 (Ceric.23G016700)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation