- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Aliases : LHCB4.1, Ceric.22G069400
Description : component *(LHCb4) of LHC-II complex & original description: pacid=50615199 polypeptide=Ceric.22G069400.1.p locus=Ceric.22G069400 ID=Ceric.22G069400.1.v2.1 annot-version=v2.1
Gene families : OG0003968 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003968_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00029p00239610 | LHCB4.2,... | Photosynthesis.photophosphorylation.photosystem... | 0.2 | OrthoFinder output from all 47 species | |
| AT3G08940 | LHCB4.2 | light harvesting complex photosystem II | 0.18 | OrthoFinder output from all 47 species | |
| AT5G01530 | LHCB4.1 | light harvesting complex photosystem II | 0.18 | OrthoFinder output from all 47 species | |
| Adi_g047687 | LHCB4.1 | component *(LHCb4) of LHC-II complex & original description: none | 0.23 | OrthoFinder output from all 47 species | |
| Adi_g079332 | LHCB4.1 | component *(LHCb4) of LHC-II complex & original description: none | 0.2 | OrthoFinder output from all 47 species | |
| Aev_g13668 | LHCB4.2 | component *(LHCb4) of LHC-II complex & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Ala_g11240 | LHCB4.1 | component *(LHCb4) of LHC-II complex & original description: none | 0.18 | OrthoFinder output from all 47 species | |
| Als_g08280 | LHCB4.1 | component *(LHCb4) of LHC-II complex & original description: none | 0.14 | OrthoFinder output from all 47 species | |
| Aob_g39718 | LHCB4.2 | component *(LHCb4) of LHC-II complex & original description: none | 0.15 | OrthoFinder output from all 47 species | |
| Aop_g05395 | LHCB4.1 | component *(LHCb4) of LHC-II complex & original description: none | 0.2 | OrthoFinder output from all 47 species | |
| Aop_g05396 | LHCB4.1 | component *(LHCb4) of LHC-II complex & original description: none | 0.21 | OrthoFinder output from all 47 species | |
| Aspi01Gene47726.t1 | LHCB4.1, Aspi01Gene47726 | component *(LHCb4) of LHC-II complex & original description: none | 0.1 | OrthoFinder output from all 47 species | |
| Azfi_s0173.g055756 | LHCB4.2 | component *(LHCb4) of LHC-II complex & original... | 0.14 | OrthoFinder output from all 47 species | |
| Cba_g11090 | No alias | component *(LHCb4) of LHC-II complex & original description: none | 0.11 | OrthoFinder output from all 47 species | |
| Cba_g34516 | LHCB4.1 | component *(LHCb4) of LHC-II complex & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Ceric.06G083500.1 | LHCB4.2, Ceric.06G083500 | not classified & original description: pacid=50619025... | 0.04 | OrthoFinder output from all 47 species | |
| Cre17.g720250 | LHCB4.3 | Photosynthesis.photophosphorylation.photosystem... | 0.16 | OrthoFinder output from all 47 species | |
| Dac_g23809 | LHCB4.2 | component *(LHCb4) of LHC-II complex & original description: none | 0.18 | OrthoFinder output from all 47 species | |
| Dcu_g45560 | LHCB4.1 | component *(LHCb4) of LHC-II complex & original description: none | 0.15 | OrthoFinder output from all 47 species | |
| Dcu_g49585 | LHCB4.1 | component *(LHCb4) of LHC-II complex & original description: none | 0.21 | OrthoFinder output from all 47 species | |
| Dde_g10605 | LHCB4.2 | component *(LHCb4) of LHC-II complex & original description: none | 0.2 | OrthoFinder output from all 47 species | |
| Ehy_g03348 | LHCB4.1 | component *(LHCb4) of LHC-II complex & original description: none | 0.18 | OrthoFinder output from all 47 species | |
| Ehy_g21710 | LHCB4.1 | component *(LHCb4) of LHC-II complex & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Gb_13368 | LHCB4.3 | component LHCb4 of LHC-II complex | 0.06 | OrthoFinder output from all 47 species | |
| Gb_38595 | LHCB4.1 | component LHCb4 of LHC-II complex | 0.17 | OrthoFinder output from all 47 species | |
| LOC_Os07g37240.1 | LHCB4.1, LOC_Os07g37240 | component LHCb4 of LHC-II complex | 0.25 | OrthoFinder output from all 47 species | |
| Len_g31128 | LHCB4.2 | component *(LHCb4) of LHC-II complex & original description: none | 0.2 | OrthoFinder output from all 47 species | |
| Len_g34078 | LHCB4.2 | component *(LHCb4) of LHC-II complex & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| MA_129206g0010 | LHCB4.2 | component LHCb4 of LHC-II complex | 0.23 | OrthoFinder output from all 47 species | |
| Mp1g16850.1 | LHCB4.1 | component LHCb4 of LHC-II complex | 0.35 | OrthoFinder output from all 47 species | |
| Msp_g07941 | LHCB4.2 | component *(LHCb4) of LHC-II complex & original description: none | 0.15 | OrthoFinder output from all 47 species | |
| Nbi_g01855 | LHCB4.2 | component *(LHCb4) of LHC-II complex & original description: none | 0.18 | OrthoFinder output from all 47 species | |
| Pir_g15460 | LHCB4.1 | component *(LHCb4) of LHC-II complex & original description: none | 0.12 | OrthoFinder output from all 47 species | |
| Pnu_g33035 | LHCB4.1 | component *(LHCb4) of LHC-II complex & original description: none | 0.11 | OrthoFinder output from all 47 species | |
| Pp3c12_25460V3.1 | LHCB4.1, Pp3c12_25460 | light harvesting complex photosystem II | 0.1 | OrthoFinder output from all 47 species | |
| Ppi_g08836 | LHCB4.3 | component *(LHCb4) of LHC-II complex & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ppi_g15010 | LHCB4.2 | component *(LHCb4) of LHC-II complex & original description: none | 0.12 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0067.g016319 | LHCB4.1 | component *(LHCb4) of LHC-II complex & original... | 0.05 | OrthoFinder output from all 47 species | |
| Smo149722 | LHCB4.2 | Photosynthesis.photophosphorylation.photosystem... | 0.14 | OrthoFinder output from all 47 species | |
| Solyc09g014520.3.1 | LHCB4.1, Solyc09g014520 | component LHCb4 of LHC-II complex | 0.26 | OrthoFinder output from all 47 species | |
| Spa_g08357 | LHCB4.1 | component *(LHCb4) of LHC-II complex & original description: none | 0.14 | OrthoFinder output from all 47 species | |
| Spa_g50929 | LHCB4.1 | component *(LHCb4) of LHC-II complex & original description: none | 0.2 | OrthoFinder output from all 47 species | |
| Spa_g50930 | LHCB4.1 | component *(LHCb4) of LHC-II complex & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Spa_g50931 | LHCB4.1 | component *(LHCb4) of LHC-II complex & original description: none | 0.12 | OrthoFinder output from all 47 species | |
| Tin_g08576 | LHCB4.1 | component *(LHCb4) of LHC-II complex & original description: none | 0.16 | OrthoFinder output from all 47 species | |
| Zm00001e010547_P001 | LHCB4.1, Zm00001e010547 | component LHCb4 of LHC-II complex | 0.23 | OrthoFinder output from all 47 species | |
| Zm00001e035235_P001 | LHCB4.1, Zm00001e035235 | component LHCb4 of LHC-II complex | 0.23 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004618 | phosphoglycerate kinase activity | IEP | HCCA |
| MF | GO:0005215 | transporter activity | IEP | HCCA |
| MF | GO:0005216 | monoatomic ion channel activity | IEP | HCCA |
| MF | GO:0005261 | monoatomic cation channel activity | IEP | HCCA |
| MF | GO:0005509 | calcium ion binding | IEP | HCCA |
| CC | GO:0005575 | cellular_component | IEP | HCCA |
| BP | GO:0006090 | pyruvate metabolic process | IEP | HCCA |
| BP | GO:0006096 | glycolytic process | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006163 | purine nucleotide metabolic process | IEP | HCCA |
| BP | GO:0006164 | purine nucleotide biosynthetic process | IEP | HCCA |
| BP | GO:0006165 | nucleoside diphosphate phosphorylation | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| BP | GO:0006753 | nucleoside phosphate metabolic process | IEP | HCCA |
| BP | GO:0006754 | ATP biosynthetic process | IEP | HCCA |
| BP | GO:0006757 | ATP generation from ADP | IEP | HCCA |
| BP | GO:0006793 | phosphorus metabolic process | IEP | HCCA |
| BP | GO:0006796 | phosphate-containing compound metabolic process | IEP | HCCA |
| BP | GO:0008150 | biological_process | IEP | HCCA |
| BP | GO:0008152 | metabolic process | IEP | HCCA |
| MF | GO:0008324 | monoatomic cation transmembrane transporter activity | IEP | HCCA |
| BP | GO:0009058 | biosynthetic process | IEP | HCCA |
| BP | GO:0009117 | nucleotide metabolic process | IEP | HCCA |
| BP | GO:0009132 | nucleoside diphosphate metabolic process | IEP | HCCA |
| BP | GO:0009135 | purine nucleoside diphosphate metabolic process | IEP | HCCA |
| BP | GO:0009141 | nucleoside triphosphate metabolic process | IEP | HCCA |
| BP | GO:0009142 | nucleoside triphosphate biosynthetic process | IEP | HCCA |
| BP | GO:0009144 | purine nucleoside triphosphate metabolic process | IEP | HCCA |
| BP | GO:0009145 | purine nucleoside triphosphate biosynthetic process | IEP | HCCA |
| BP | GO:0009150 | purine ribonucleotide metabolic process | IEP | HCCA |
| BP | GO:0009152 | purine ribonucleotide biosynthetic process | IEP | HCCA |
| BP | GO:0009165 | nucleotide biosynthetic process | IEP | HCCA |
| BP | GO:0009179 | purine ribonucleoside diphosphate metabolic process | IEP | HCCA |
| BP | GO:0009185 | ribonucleoside diphosphate metabolic process | IEP | HCCA |
| BP | GO:0009199 | ribonucleoside triphosphate metabolic process | IEP | HCCA |
| BP | GO:0009201 | ribonucleoside triphosphate biosynthetic process | IEP | HCCA |
| BP | GO:0009205 | purine ribonucleoside triphosphate metabolic process | IEP | HCCA |
| BP | GO:0009206 | purine ribonucleoside triphosphate biosynthetic process | IEP | HCCA |
| BP | GO:0009259 | ribonucleotide metabolic process | IEP | HCCA |
| BP | GO:0009260 | ribonucleotide biosynthetic process | IEP | HCCA |
| CC | GO:0009521 | photosystem | IEP | HCCA |
| CC | GO:0009522 | photosystem I | IEP | HCCA |
| CC | GO:0009523 | photosystem II | IEP | HCCA |
| CC | GO:0009538 | photosystem I reaction center | IEP | HCCA |
| CC | GO:0009654 | photosystem II oxygen evolving complex | IEP | HCCA |
| BP | GO:0009987 | cellular process | IEP | HCCA |
| BP | GO:0010109 | regulation of photosynthesis | IEP | HCCA |
| BP | GO:0010207 | photosystem II assembly | IEP | HCCA |
| MF | GO:0010242 | oxygen evolving activity | IEP | HCCA |
| MF | GO:0015075 | monoatomic ion transmembrane transporter activity | IEP | HCCA |
| MF | GO:0015078 | proton transmembrane transporter activity | IEP | HCCA |
| MF | GO:0015252 | proton channel activity | IEP | HCCA |
| MF | GO:0015267 | channel activity | IEP | HCCA |
| MF | GO:0015318 | inorganic molecular entity transmembrane transporter activity | IEP | HCCA |
| BP | GO:0015979 | photosynthesis | IEP | HCCA |
| BP | GO:0015986 | proton motive force-driven ATP synthesis | IEP | HCCA |
| BP | GO:0016052 | carbohydrate catabolic process | IEP | HCCA |
| MF | GO:0016774 | phosphotransferase activity, carboxyl group as acceptor | IEP | HCCA |
| MF | GO:0016874 | ligase activity | IEP | HCCA |
| BP | GO:0018130 | heterocycle biosynthetic process | IEP | HCCA |
| BP | GO:0019438 | aromatic compound biosynthetic process | IEP | HCCA |
| BP | GO:0019637 | organophosphate metabolic process | IEP | HCCA |
| BP | GO:0019693 | ribose phosphate metabolic process | IEP | HCCA |
| CC | GO:0019898 | extrinsic component of membrane | IEP | HCCA |
| MF | GO:0022803 | passive transmembrane transporter activity | IEP | HCCA |
| MF | GO:0022857 | transmembrane transporter activity | IEP | HCCA |
| MF | GO:0022890 | inorganic cation transmembrane transporter activity | IEP | HCCA |
| CC | GO:0032991 | protein-containing complex | IEP | HCCA |
| CC | GO:0033177 | proton-transporting two-sector ATPase complex, proton-transporting domain | IEP | HCCA |
| CC | GO:0033178 | proton-transporting two-sector ATPase complex, catalytic domain | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | HCCA |
| BP | GO:0042548 | regulation of photosynthesis, light reaction | IEP | HCCA |
| BP | GO:0042549 | photosystem II stabilization | IEP | HCCA |
| BP | GO:0043467 | regulation of generation of precursor metabolites and energy | IEP | HCCA |
| BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
| BP | GO:0044249 | cellular biosynthetic process | IEP | HCCA |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | HCCA |
| BP | GO:0044281 | small molecule metabolic process | IEP | HCCA |
| CC | GO:0045261 | proton-transporting ATP synthase complex, catalytic core F(1) | IEP | HCCA |
| CC | GO:0045263 | proton-transporting ATP synthase complex, coupling factor F(o) | IEP | HCCA |
| BP | GO:0046031 | ADP metabolic process | IEP | HCCA |
| BP | GO:0046034 | ATP metabolic process | IEP | HCCA |
| BP | GO:0046390 | ribose phosphate biosynthetic process | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| MF | GO:0046933 | proton-transporting ATP synthase activity, rotational mechanism | IEP | HCCA |
| BP | GO:0046939 | nucleotide phosphorylation | IEP | HCCA |
| BP | GO:0055086 | nucleobase-containing small molecule metabolic process | IEP | HCCA |
| BP | GO:0072521 | purine-containing compound metabolic process | IEP | HCCA |
| BP | GO:0072522 | purine-containing compound biosynthetic process | IEP | HCCA |
| BP | GO:0090407 | organophosphate biosynthetic process | IEP | HCCA |
| CC | GO:0098796 | membrane protein complex | IEP | HCCA |
| BP | GO:1901135 | carbohydrate derivative metabolic process | IEP | HCCA |
| BP | GO:1901137 | carbohydrate derivative biosynthetic process | IEP | HCCA |
| BP | GO:1901293 | nucleoside phosphate biosynthetic process | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | HCCA |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | HCCA |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | HCCA |
| CC | GO:1902494 | catalytic complex | IEP | HCCA |
| CC | GO:1990204 | oxidoreductase complex | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR022796 | Chloroa_b-bind | 70 | 266 |
| No external refs found! |