Ceric.22G057500.1 (Ceric.22G057500)

Aliases : Ceric.22G057500

Description : type-Ia DNA topoisomerase & original description: pacid=50614290 polypeptide=Ceric.22G057500.1.p locus=Ceric.22G057500 ID=Ceric.22G057500.1.v2.1 annot-version=v2.1

Gene families : OG0003699 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003699_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ceric.22G057500.1
Cluster	HCCA: Cluster_149

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00006p00253660	evm_27.TU.AmTr_v1...	Cell cycle.organelle machineries.DNA replication.type-Ia...	0.06	OrthoFinder output from all 47 species
AT4G31210	No alias	DNA topoisomerase, type IA, core	0.07	OrthoFinder output from all 47 species
Adi_g021892	No alias	type-Ia DNA topoisomerase & original description: none	0.04	OrthoFinder output from all 47 species
Als_g48687	No alias	type-Ia DNA topoisomerase & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g27398	No alias	type-Ia DNA topoisomerase & original description: none	0.04	OrthoFinder output from all 47 species
Cba_g78123	No alias	type-Ia DNA topoisomerase & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g46291	No alias	type-Ia DNA topoisomerase & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g02044	No alias	type-Ia DNA topoisomerase & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g46327	No alias	type-Ia DNA topoisomerase & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01035576001	No alias	Cell cycle.organelle machineries.DNA replication.type-Ia...	0.06	OrthoFinder output from all 47 species
Lfl_g10335	No alias	type-Ia DNA topoisomerase & original description: none	0.04	OrthoFinder output from all 47 species
Msp_g13526	No alias	type-Ia DNA topoisomerase & original description: none	0.06	OrthoFinder output from all 47 species
Msp_g47727	No alias	type-Ia DNA topoisomerase & original description: none	0.05	OrthoFinder output from all 47 species
Nbi_g24909	No alias	type-Ia DNA topoisomerase & original description: none	0.04	OrthoFinder output from all 47 species
Nbi_g42340	No alias	type-Ia DNA topoisomerase & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g17408	No alias	type-Ia DNA topoisomerase & original description: none	0.08	OrthoFinder output from all 47 species
Ore_g37104	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g20904	No alias	type-Ia DNA topoisomerase & original description: none	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0226.g026330	No alias	type-Ia DNA topoisomerase & original description: CDS=286-4206	0.06	OrthoFinder output from all 47 species
Sam_g28178	No alias	type-Ia DNA topoisomerase & original description: none	0.03	OrthoFinder output from all 47 species
Solyc02g081910.2.1	Solyc02g081910	type-Ia DNA topoisomerase	0.04	OrthoFinder output from all 47 species
Zm00001e030979_P001	Zm00001e030979	type-Ia DNA topoisomerase	0.03	OrthoFinder output from all 47 species
Zm00001e036824_P001	Zm00001e036824	type-Ia DNA topoisomerase	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003916	DNA topoisomerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006265	DNA topological change	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016853	isomerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0071103	DNA conformation change	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000724	double-strand break repair via homologous recombination	IEP	HCCA
BP	GO:0000725	recombinational repair	IEP	HCCA
MF	GO:0003918	DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity	IEP	HCCA
MF	GO:0004175	endopeptidase activity	IEP	HCCA
MF	GO:0004176	ATP-dependent peptidase activity	IEP	HCCA
MF	GO:0004222	metalloendopeptidase activity	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006302	double-strand break repair	IEP	HCCA
BP	GO:0006310	DNA recombination	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
BP	GO:0008033	tRNA processing	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
MF	GO:0016887	ATP hydrolysis activity	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
MF	GO:0140299	small molecule sensor activity	IEP	HCCA
MF	GO:0140612	DNA damage sensor activity	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
MF	GO:0140664	ATP-dependent DNA damage sensor activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006171	TOPRIM_domain	147	261
IPR013497	Topo_IA_cen	279	432

External Links

No external refs found!

Ceric.22G057500.1 (Ceric.22G057500)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation