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  5. Ceric.22G023600.1

Ceric.22G023600.1 (PAP(IV), nPAP, Ceric.22G023600)


Aliases : PAP(IV), nPAP, Ceric.22G023600

Description : poly(A) RNA polymerase & original description: pacid=50614667 polypeptide=Ceric.22G023600.1.p locus=Ceric.22G023600 ID=Ceric.22G023600.1.v2.1 annot-version=v2.1


Gene families : OG0000731 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000731_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.22G023600.1

Target Alias Description ECC score Gene Family Method Actions
AT2G25850 PAPS2 poly(A) polymerase 2 0.04 OrthoFinder output from all 47 species
AT4G32850 PAP(IV), nPAP nuclear poly(a) polymerase 0.04 OrthoFinder output from all 47 species
Adi_g055927 PAPS1 poly(A) RNA polymerase & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g085047 PAP(IV), nPAP poly(A) RNA polymerase & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g102293 PAPS2 poly(A) RNA polymerase & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g06963 PAP(IV), nPAP poly(A) RNA polymerase & original description: none 0.05 OrthoFinder output from all 47 species
Als_g33647 PAP(IV), nPAP poly(A) RNA polymerase & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0209.g058047 PAP(IV), nPAP poly(A) RNA polymerase & original description: CDS=403-2583 0.03 OrthoFinder output from all 47 species
Dcu_g13917 PAP(IV), nPAP poly(A) RNA polymerase & original description: none 0.06 OrthoFinder output from all 47 species
GSVIVT01008352001 PAPS1 RNA processing.RNA 3-end polyadenylation.poly(A) RNA polymerase 0.03 OrthoFinder output from all 47 species
LOC_Os06g36360.2 PAP(IV), nPAP,... poly(A) RNA polymerase 0.02 OrthoFinder output from all 47 species
Lfl_g10052 PAP(IV), nPAP poly(A) RNA polymerase & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g15635 PAP(IV), nPAP poly(A) RNA polymerase & original description: none 0.03 OrthoFinder output from all 47 species
MA_100058g0010 PAP(IV), nPAP poly(A) RNA polymerase 0.03 OrthoFinder output from all 47 species
MA_136671g0010 PAP(IV), nPAP poly(A) RNA polymerase 0.02 OrthoFinder output from all 47 species
Ppi_g08262 PAP(IV), nPAP poly(A) RNA polymerase & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0108.g020416 PAP(IV), nPAP poly(A) RNA polymerase & original description: CDS=1-2220 0.03 OrthoFinder output from all 47 species
Solyc08g066200.3.1 PAP(IV), nPAP,... poly(A) RNA polymerase 0.03 OrthoFinder output from all 47 species
Zm00001e005199_P002 PAPS1, Zm00001e005199 poly(A) RNA polymerase 0.04 OrthoFinder output from all 47 species
Zm00001e012328_P001 PAPS1, Zm00001e012328 poly(A) RNA polymerase 0.03 OrthoFinder output from all 47 species
Zm00001e030659_P006 PAP(IV), nPAP,... poly(A) RNA polymerase 0.03 OrthoFinder output from all 47 species
Zm00001e037202_P005 PAP(IV), nPAP,... poly(A) RNA polymerase 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0004652 polynucleotide adenylyltransferase activity IEA Interproscan
MF GO:0016779 nucleotidyltransferase activity IEA Interproscan
BP GO:0043631 RNA polyadenylation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004814 arginine-tRNA ligase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006420 arginyl-tRNA aminoacylation IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR007010 PolA_pol_RNA-bd_dom 359 416
IPR007012 PolA_pol_cen_dom 12 355
IPR002934 Polymerase_NTP_transf_dom 85 166
No external refs found!