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  5. Ceric.16G035800.1

Ceric.16G035800.1 (RNR1, ATMTRNASEII,...)


Aliases : RNR1, ATMTRNASEII, EMB2730, Ceric.16G035800

Description : exoribonuclease *(RNase R) & original description: pacid=50589175 polypeptide=Ceric.16G035800.1.p locus=Ceric.16G035800 ID=Ceric.16G035800.1.v2.1 annot-version=v2.1


Gene families : OG0003116 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003116_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.16G035800.1
Cluster HCCA: Cluster_131

Target Alias Description ECC score Gene Family Method Actions
Adi_g010538 RNR1,... exoribonuclease *(RNase R) & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g06373 RNR1,... exoribonuclease *(RNase R) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g16173 RNR1,... exoribonuclease *(RNase R) & original description: none 0.08 OrthoFinder output from all 47 species
Aop_g21148 RNR1,... exoribonuclease *(RNase R) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0076.g037820 RNR1,... exoribonuclease *(RNase R) & original description: CDS=121-2559 0.05 OrthoFinder output from all 47 species
Azfi_s0557.g076879 RNR1,... exoribonuclease *(RNase R) & original description: CDS=154-2526 0.02 OrthoFinder output from all 47 species
Cba_g76589 RNR1,... exoribonuclease *(RNase R) & original description: none 0.02 OrthoFinder output from all 47 species
Cre12.g500650 RNR1,... RNA processing.organelle machineries.ribonuclease... 0.03 OrthoFinder output from all 47 species
Dac_g11195 RNR1,... exoribonuclease *(RNase R) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g23634 RNR1,... exoribonuclease *(RNase R) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g42353 RNR1,... exoribonuclease *(RNase R) & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01034161001 RNR1,... RNA processing.organelle machineries.ribonuclease... 0.02 OrthoFinder output from all 47 species
LOC_Os01g62440.1 RNR1,... exoribonuclease (RNase R) 0.05 OrthoFinder output from all 47 species
Lfl_g02157 RNR1,... exoribonuclease *(RNase R) & original description: none 0.09 OrthoFinder output from all 47 species
Mp3g07060.1 RNR1,... exoribonuclease (RNase R) 0.07 OrthoFinder output from all 47 species
Nbi_g16036 RNR1,... exoribonuclease *(RNase R) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g25156 RNR1,... exoribonuclease *(RNase R) & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g09686 RNR1,... exoribonuclease *(RNase R) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g09786 RNR1,... exoribonuclease *(RNase R) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g48435 RNR1,... exoribonuclease *(RNase R) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0038.g011986 RNR1,... exoribonuclease *(RNase R) & original description: CDS=1-2217 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0057.g014701 RNR1,... exoribonuclease *(RNase R) & original description: CDS=112-2388 0.03 OrthoFinder output from all 47 species
Smo145357 RNR1,... RNA processing.organelle machineries.ribonuclease... 0.04 OrthoFinder output from all 47 species
Solyc09g010870.4.1 RNR1,... exoribonuclease (RNase R) 0.06 OrthoFinder output from all 47 species
Spa_g26797 RNR1,... exoribonuclease *(RNase R) & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e019318_P002 RNR1,... exoribonuclease (RNase R) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0004540 ribonuclease activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004177 aminopeptidase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004813 alanine-tRNA ligase activity IEP HCCA
MF GO:0004817 cysteine-tRNA ligase activity IEP HCCA
MF GO:0004827 proline-tRNA ligase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006419 alanyl-tRNA aminoacylation IEP HCCA
BP GO:0006423 cysteinyl-tRNA aminoacylation IEP HCCA
BP GO:0006433 prolyl-tRNA aminoacylation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001900 RNase_II/R 335 629
No external refs found!