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  5. Dcu_g48259

Dcu_g48259 (SPI)


Aliases : SPI

Description : not classified & original description: none


Gene families : OG0003198 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003198_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g48259

Target Alias Description ECC score Gene Family Method Actions
AT1G03060 SPI Beige/BEACH domain ;WD domain, G-beta repeat protein 0.06 OrthoFinder output from all 47 species
Ala_g30609 SPI not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0034.g025324 SPI not classified & original description: CDS=1-3033 0.04 OrthoFinder output from all 47 species
Ceric.12G054200.1 SPI, Ceric.12G054200 not classified & original description: pacid=50600477... 0.04 OrthoFinder output from all 47 species
GSVIVT01003123001 SPI BEACH domain-containing protein A2 OS=Arabidopsis thaliana 0.08 OrthoFinder output from all 47 species
Gb_31352 SPI Protein SPIRRIG OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Len_g08661 SPI not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_12084g0010 SPI Protein SPIRRIG OS=Arabidopsis thaliana... 0.07 OrthoFinder output from all 47 species
Mp2g15880.1 SPI Protein SPIRRIG OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Ore_g04811 SPI not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc09g065700.3.1 SPI, Solyc09g065700 Protein SPIRRIG OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e005644_P001 SPI, Zm00001e005644 Protein SPIRRIG OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR000409 BEACH_dom 2989 3267
IPR023362 PH-BEACH_dom 2901 2950
IPR046851 NBCH_WD40 3325 3484
No external refs found!