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  5. Dcu_g24337

Dcu_g24337


Description : basal transcription factor *(TFIa/RRN3) & original description: none


Gene families : OG0004620 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004620_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g24337

Target Alias Description ECC score Gene Family Method Actions
AT2G34750 No alias RNA polymerase I specific transcription initiation... 0.02 OrthoFinder output from all 47 species
Aob_g13469 No alias basal transcription factor *(TFIa/RRN3) & original... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001206.24 No alias RNA biosynthesis.RNA polymerase I-dependent... 0.02 OrthoFinder output from all 47 species
Dac_g11606 No alias basal transcription factor *(TFIa/RRN3) & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0188.g025169 No alias basal transcription factor *(TFIa/RRN3) & original... 0.03 OrthoFinder output from all 47 species
Spa_g08444 No alias basal transcription factor *(TFIa/RRN3) & original... 0.06 OrthoFinder output from all 47 species
Zm00001e013105_P001 Zm00001e013105 basal transcription factor (TFIa/RRN3) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0001181 RNA polymerase I general transcription initiation factor activity IEA Interproscan
BP GO:0006361 transcription initiation at RNA polymerase I promoter IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR007991 RNA_pol_I_trans_ini_fac_RRN3 21 571
No external refs found!