Dcu_g23739 (ATCSTF77, CSTF77)

Aliases : ATCSTF77, CSTF77

Description : component *(CstF77/Rna14) of Cleavage Stimulatory Factor (CstF) complex & original description: none

Gene families : OG0004932 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004932_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Dcu_g23739
Cluster	HCCA: Cluster_57

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00101p00084550	ATCSTF77,...	RNA processing.RNA 3-end polyadenylation.Cleavage...	0.05	OrthoFinder output from all 47 species
Adi_g057301	ATCSTF77, CSTF77	component *(CstF77/Rna14) of Cleavage Stimulatory Factor...	0.02	OrthoFinder output from all 47 species
Azfi_s0580.g078308	ATCSTF77, CSTF77	component *(CstF77/Rna14) of Cleavage Stimulatory Factor...	0.03	OrthoFinder output from all 47 species
Azfi_s0580.g078310	ATCSTF77, CSTF77	component *(CstF77/Rna14) of Cleavage Stimulatory Factor...	0.03	OrthoFinder output from all 47 species
Ceric.11G049100.1	ATCSTF77,...	component *(CstF77/Rna14) of Cleavage Stimulatory Factor...	0.03	OrthoFinder output from all 47 species
Cre12.g506050	ATCSTF77, CSTF77	RNA processing.RNA 3-end polyadenylation.Cleavage...	0.03	OrthoFinder output from all 47 species
Ehy_g20044	ATCSTF77, CSTF77	component *(CstF77/Rna14) of Cleavage Stimulatory Factor...	0.03	OrthoFinder output from all 47 species
LOC_Os12g38380.1	ATCSTF77,...	component CstF77/Rna14 of Cleavage Stimulatory Factor...	0.02	OrthoFinder output from all 47 species
Lfl_g02187	ATCSTF77, CSTF77	component *(CstF77/Rna14) of Cleavage Stimulatory Factor...	0.04	OrthoFinder output from all 47 species
Ore_g11384	ATCSTF77, CSTF77	component *(CstF77/Rna14) of Cleavage Stimulatory Factor...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0095.g019187	ATCSTF77, CSTF77	component *(CstF77/Rna14) of Cleavage Stimulatory Factor...	0.03	OrthoFinder output from all 47 species
Solyc10g050540.2.1	ATCSTF77,...	component CstF77/Rna14 of Cleavage Stimulatory Factor...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0003674	molecular_function	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003729	mRNA binding	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
CC	GO:0005643	nuclear pore	IEP	HCCA
CC	GO:0005685	U1 snRNP	IEP	HCCA
CC	GO:0005730	nucleolus	IEP	HCCA
CC	GO:0005732	sno(s)RNA-containing ribonucleoprotein complex	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006376	mRNA splice site selection	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0006913	nucleocytoplasmic transport	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
MF	GO:0017056	structural constituent of nuclear pore	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	HCCA
MF	GO:0030515	snoRNA binding	IEP	HCCA
CC	GO:0030532	small nuclear ribonucleoprotein complex	IEP	HCCA
MF	GO:0031072	heat shock protein binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
CC	GO:0034457	Mpp10 complex	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
MF	GO:0034511	U3 snoRNA binding	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
MF	GO:0051082	unfolded protein binding	IEP	HCCA
BP	GO:0051169	nuclear transport	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
CC	GO:0097525	spliceosomal snRNP complex	IEP	HCCA
CC	GO:0120114	Sm-like protein family complex	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR008847	Suf	387	745

External Links

No external refs found!

Dcu_g23739 (ATCSTF77, CSTF77)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation