Coexpression cluster: Cluster_57 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003676 nucleic acid binding 21.16% (40/189) 2.89 0.0 0.0
GO:0005488 binding 38.1% (72/189) 1.71 0.0 0.0
GO:0003723 RNA binding 11.64% (22/189) 3.42 0.0 0.0
GO:0097159 organic cyclic compound binding 23.81% (45/189) 1.83 0.0 0.0
GO:1901363 heterocyclic compound binding 23.81% (45/189) 1.83 0.0 0.0
GO:0003674 molecular_function 44.97% (85/189) 1.11 0.0 0.0
GO:0006396 RNA processing 5.29% (10/189) 4.38 0.0 0.0
GO:0090304 nucleic acid metabolic process 7.94% (15/189) 3.17 0.0 0.0
GO:0016070 RNA metabolic process 6.88% (13/189) 3.45 0.0 0.0
GO:0006139 nucleobase-containing compound metabolic process 8.47% (16/189) 2.76 0.0 0.0
GO:0046483 heterocycle metabolic process 8.47% (16/189) 2.61 0.0 0.0
GO:0006725 cellular aromatic compound metabolic process 8.47% (16/189) 2.61 0.0 0.0
GO:1901360 organic cyclic compound metabolic process 8.47% (16/189) 2.55 0.0 0.0
GO:0005515 protein binding 12.17% (23/189) 1.95 0.0 1e-06
GO:0140097 catalytic activity, acting on DNA 2.65% (5/189) 4.49 3e-06 4.2e-05
GO:0140640 catalytic activity, acting on a nucleic acid 4.23% (8/189) 3.14 4e-06 5.3e-05
GO:0008094 ATP-dependent activity, acting on DNA 2.12% (4/189) 4.82 1.3e-05 0.000154
GO:0140658 ATP-dependent chromatin remodeler activity 1.59% (3/189) 4.88 0.000145 0.001581
GO:0051276 chromosome organization 1.59% (3/189) 4.88 0.000145 0.001581
GO:0006376 mRNA splice site selection 1.06% (2/189) 6.52 0.000196 0.00176
GO:0005685 U1 snRNP 1.06% (2/189) 6.52 0.000196 0.00176
GO:0097747 RNA polymerase activity 1.59% (3/189) 4.78 0.000179 0.001763
GO:0034062 5'-3' RNA polymerase activity 1.59% (3/189) 4.78 0.000179 0.001763
GO:0003916 DNA topoisomerase activity 1.06% (2/189) 6.3 0.000273 0.001949
GO:0006265 DNA topological change 1.06% (2/189) 6.3 0.000273 0.001949
GO:0034641 cellular nitrogen compound metabolic process 8.47% (16/189) 1.48 0.000239 0.002059
GO:0140513 nuclear protein-containing complex 2.12% (4/189) 3.69 0.000273 0.002092
GO:0016043 cellular component organization 3.17% (6/189) 2.77 0.00027 0.002147
GO:0016779 nucleotidyltransferase activity 2.12% (4/189) 3.71 0.000261 0.002159
GO:0071840 cellular component organization or biogenesis 3.17% (6/189) 2.67 0.000396 0.002729
GO:0022618 ribonucleoprotein complex assembly 1.06% (2/189) 5.93 0.000466 0.002923
GO:0003729 mRNA binding 1.06% (2/189) 5.93 0.000466 0.002923
GO:0071826 ribonucleoprotein complex subunit organization 1.06% (2/189) 5.93 0.000466 0.002923
GO:0003677 DNA binding 4.76% (9/189) 1.99 0.000491 0.002988
GO:0030532 small nuclear ribonucleoprotein complex 1.06% (2/189) 5.64 0.000708 0.003964
GO:0097525 spliceosomal snRNP complex 1.06% (2/189) 5.64 0.000708 0.003964
GO:0120114 Sm-like protein family complex 1.06% (2/189) 5.64 0.000708 0.003964
GO:0005634 nucleus 2.12% (4/189) 3.3 0.000775 0.004224
GO:0006996 organelle organization 1.59% (3/189) 3.83 0.001262 0.006697
GO:0071103 DNA conformation change 1.06% (2/189) 5.2 0.00134 0.006933
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 1.06% (2/189) 4.78 0.002395 0.012093
GO:0043227 membrane-bounded organelle 2.12% (4/189) 2.59 0.004625 0.022263
GO:0043231 intracellular membrane-bounded organelle 2.12% (4/189) 2.59 0.004536 0.022357
GO:0065003 protein-containing complex assembly 1.59% (3/189) 3.15 0.004835 0.022747
GO:0006364 rRNA processing 1.06% (2/189) 4.2 0.005355 0.024096
GO:0016072 rRNA metabolic process 1.06% (2/189) 4.2 0.005355 0.024096
GO:0043933 protein-containing complex organization 1.59% (3/189) 3.04 0.005914 0.026049
GO:0006397 mRNA processing 1.06% (2/189) 4.06 0.006453 0.027829
GO:0004652 polynucleotide adenylyltransferase activity 0.53% (1/189) 7.1 0.007262 0.027838
GO:1903311 regulation of mRNA metabolic process 0.53% (1/189) 7.1 0.007262 0.027838
GO:0050684 regulation of mRNA processing 0.53% (1/189) 7.1 0.007262 0.027838
GO:0048024 regulation of mRNA splicing, via spliceosome 0.53% (1/189) 7.1 0.007262 0.027838
GO:0000381 regulation of alternative mRNA splicing, via spliceosome 0.53% (1/189) 7.1 0.007262 0.027838
GO:0043484 regulation of RNA splicing 0.53% (1/189) 7.1 0.007262 0.027838
GO:0022607 cellular component assembly 1.59% (3/189) 2.87 0.008275 0.031143
GO:0016071 mRNA metabolic process 1.06% (2/189) 3.75 0.009833 0.036347
GO:0043631 RNA polyadenylation 0.53% (1/189) 6.52 0.010873 0.039488
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Abrodictyum obscurum HCCA Cluster_151 0.032 OrthoFinder output from all 47 species Compare
Abrodictyum obscurum HCCA Cluster_153 0.028 OrthoFinder output from all 47 species Compare
Abrodictyum obscurum HCCA Cluster_166 0.027 OrthoFinder output from all 47 species Compare
Actinostachys digitata HCCA Cluster_360 0.017 OrthoFinder output from all 47 species Compare
Angiopteris evecta HCCA Cluster_45 0.016 OrthoFinder output from all 47 species Compare
Angiopteris evecta HCCA Cluster_123 0.085 OrthoFinder output from all 47 species Compare
Azolla filiculoides HCCA Cluster_2 0.024 OrthoFinder output from all 47 species Compare
Azolla filiculoides HCCA Cluster_6 0.018 OrthoFinder output from all 47 species Compare
Azolla filiculoides HCCA Cluster_19 0.039 OrthoFinder output from all 47 species Compare
Azolla filiculoides HCCA Cluster_32 0.05 OrthoFinder output from all 47 species Compare
Azolla filiculoides HCCA Cluster_41 0.022 OrthoFinder output from all 47 species Compare
Azolla filiculoides HCCA Cluster_43 0.019 OrthoFinder output from all 47 species Compare
Azolla filiculoides HCCA Cluster_71 0.018 OrthoFinder output from all 47 species Compare
Azolla filiculoides HCCA Cluster_93 0.015 OrthoFinder output from all 47 species Compare
Azolla filiculoides HCCA Cluster_96 0.043 OrthoFinder output from all 47 species Compare
Adiantum latifolium HCCA Cluster_92 0.118 OrthoFinder output from all 47 species Compare
Adiantum latifolium HCCA Cluster_145 0.039 OrthoFinder output from all 47 species Compare
Alsophila latebrosa HCCA Cluster_205 0.027 OrthoFinder output from all 47 species Compare
Amblovenatum opulentum HCCA Cluster_42 0.016 OrthoFinder output from all 47 species Compare
Amblovenatum opulentum HCCA Cluster_48 0.017 OrthoFinder output from all 47 species Compare
Amblovenatum opulentum HCCA Cluster_53 0.045 OrthoFinder output from all 47 species Compare
Amblovenatum opulentum HCCA Cluster_279 0.022 OrthoFinder output from all 47 species Compare
Amblovenatum opulentum HCCA Cluster_293 0.02 OrthoFinder output from all 47 species Compare
Amblovenatum opulentum HCCA Cluster_328 0.036 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_11 0.018 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_17 0.024 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_22 0.022 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_37 0.033 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_39 0.036 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_75 0.025 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_76 0.016 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_83 0.016 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_86 0.035 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_110 0.016 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_111 0.018 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_129 0.018 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_130 0.019 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_132 0.018 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_138 0.017 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_141 0.017 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_154 0.022 OrthoFinder output from all 47 species Compare
Amborella trichopoda HCCA Cluster_14 0.018 OrthoFinder output from all 47 species Compare
Amborella trichopoda HCCA Cluster_99 0.015 OrthoFinder output from all 47 species Compare
Amborella trichopoda HCCA Cluster_109 0.03 OrthoFinder output from all 47 species Compare
Cibotium barometz HCCA Cluster_241 0.03 OrthoFinder output from all 47 species Compare
Cibotium barometz HCCA Cluster_263 0.017 OrthoFinder output from all 47 species Compare
Chlamydomonas reinhardtii HCCA Cluster_53 0.038 OrthoFinder output from all 47 species Compare
Chlamydomonas reinhardtii HCCA Cluster_75 0.062 OrthoFinder output from all 47 species Compare
Ceratopteris richardii HCCA Cluster_81 0.056 OrthoFinder output from all 47 species Compare
Ceratopteris richardii HCCA Cluster_121 0.112 OrthoFinder output from all 47 species Compare
Ceratopteris richardii HCCA Cluster_129 0.04 OrthoFinder output from all 47 species Compare
Diplazium proliferum (Lam.) Kaulf. HCCA Cluster_41 0.024 OrthoFinder output from all 47 species Compare
Diplazium proliferum (Lam.) Kaulf. HCCA Cluster_117 0.037 OrthoFinder output from all 47 species Compare
Diplazium proliferum (Lam.) Kaulf. HCCA Cluster_154 0.023 OrthoFinder output from all 47 species Compare
Dicranopteris curranii HCCA Cluster_175 0.018 OrthoFinder output from all 47 species Compare
Davallia denticulata HCCA Cluster_21 0.017 OrthoFinder output from all 47 species Compare
Davallia denticulata HCCA Cluster_23 0.018 OrthoFinder output from all 47 species Compare
Davallia denticulata HCCA Cluster_26 0.02 OrthoFinder output from all 47 species Compare
Davallia denticulata HCCA Cluster_47 0.017 OrthoFinder output from all 47 species Compare
Davallia denticulata HCCA Cluster_154 0.024 OrthoFinder output from all 47 species Compare
Equisetum hyemale HCCA Cluster_35 0.047 OrthoFinder output from all 47 species Compare
Equisetum hyemale HCCA Cluster_54 0.049 OrthoFinder output from all 47 species Compare
Equisetum hyemale HCCA Cluster_79 0.029 OrthoFinder output from all 47 species Compare
Equisetum hyemale HCCA Cluster_85 0.02 OrthoFinder output from all 47 species Compare
Ginkgo biloba HCCA Cluster_16 0.021 OrthoFinder output from all 47 species Compare
Ginkgo biloba HCCA Cluster_41 0.093 OrthoFinder output from all 47 species Compare
Ginkgo biloba HCCA Cluster_61 0.032 OrthoFinder output from all 47 species Compare
Lindsaea ensifolia HCCA Cluster_122 0.018 OrthoFinder output from all 47 species Compare
Lindsaea ensifolia HCCA Cluster_129 0.019 OrthoFinder output from all 47 species Compare
Lygodium flexuosum HCCA Cluster_88 0.04 OrthoFinder output from all 47 species Compare
Lygodium flexuosum HCCA Cluster_144 0.063 OrthoFinder output from all 47 species Compare
Microlepia speluncae HCCA Cluster_5 0.029 OrthoFinder output from all 47 species Compare
Microlepia speluncae HCCA Cluster_9 0.02 OrthoFinder output from all 47 species Compare
Microlepia speluncae HCCA Cluster_49 0.032 OrthoFinder output from all 47 species Compare
Microlepia speluncae HCCA Cluster_63 0.04 OrthoFinder output from all 47 species Compare
Microlepia speluncae HCCA Cluster_105 0.025 OrthoFinder output from all 47 species Compare
Microlepia speluncae HCCA Cluster_122 0.016 OrthoFinder output from all 47 species Compare
Microlepia speluncae HCCA Cluster_164 0.037 OrthoFinder output from all 47 species Compare
Marchantia polymorpha HCCA Cluster_3 0.02 OrthoFinder output from all 47 species Compare
Marchantia polymorpha HCCA Cluster_15 0.027 OrthoFinder output from all 47 species Compare
Marchantia polymorpha HCCA Cluster_41 0.042 OrthoFinder output from all 47 species Compare
Marchantia polymorpha HCCA Cluster_56 0.039 OrthoFinder output from all 47 species Compare
Marchantia polymorpha HCCA Cluster_64 0.021 OrthoFinder output from all 47 species Compare
Nephrolepis biserrata HCCA Cluster_25 0.025 OrthoFinder output from all 47 species Compare
Nephrolepis biserrata HCCA Cluster_153 0.02 OrthoFinder output from all 47 species Compare
Nephrolepis biserrata HCCA Cluster_164 0.034 OrthoFinder output from all 47 species Compare
Nephrolepis biserrata HCCA Cluster_169 0.038 OrthoFinder output from all 47 species Compare
Ophioglossum reticulatum HCCA Cluster_33 0.018 OrthoFinder output from all 47 species Compare
Ophioglossum reticulatum HCCA Cluster_40 0.072 OrthoFinder output from all 47 species Compare
Ophioglossum reticulatum HCCA Cluster_98 0.026 OrthoFinder output from all 47 species Compare
Ophioglossum reticulatum HCCA Cluster_101 0.017 OrthoFinder output from all 47 species Compare
Ophioglossum reticulatum HCCA Cluster_111 0.025 OrthoFinder output from all 47 species Compare
Ophioglossum reticulatum HCCA Cluster_113 0.019 OrthoFinder output from all 47 species Compare
Ophioglossum reticulatum HCCA Cluster_118 0.042 OrthoFinder output from all 47 species Compare
Ophioglossum reticulatum HCCA Cluster_130 0.019 OrthoFinder output from all 47 species Compare
Ophioglossum reticulatum HCCA Cluster_137 0.021 OrthoFinder output from all 47 species Compare
Ophioglossum reticulatum HCCA Cluster_153 0.024 OrthoFinder output from all 47 species Compare
Ophioglossum reticulatum HCCA Cluster_171 0.034 OrthoFinder output from all 47 species Compare
Oryza sativa HCCA Cluster_58 0.066 OrthoFinder output from all 47 species Compare
Oryza sativa HCCA Cluster_60 0.024 OrthoFinder output from all 47 species Compare
Oryza sativa HCCA Cluster_61 0.045 OrthoFinder output from all 47 species Compare
Oryza sativa HCCA Cluster_65 0.02 OrthoFinder output from all 47 species Compare
Oryza sativa HCCA Cluster_170 0.023 OrthoFinder output from all 47 species Compare
Picea abies HCCA Cluster_25 0.068 OrthoFinder output from all 47 species Compare
Picea abies HCCA Cluster_130 0.03 OrthoFinder output from all 47 species Compare
Picea abies HCCA Cluster_241 0.044 OrthoFinder output from all 47 species Compare
Pleocnemia irregularis HCCA Cluster_74 0.023 OrthoFinder output from all 47 species Compare
Pleocnemia irregularis HCCA Cluster_109 0.024 OrthoFinder output from all 47 species Compare
Pleocnemia irregularis HCCA Cluster_115 0.019 OrthoFinder output from all 47 species Compare
Pleocnemia irregularis HCCA Cluster_223 0.037 OrthoFinder output from all 47 species Compare
Psilotum nudum HCCA Cluster_1 0.023 OrthoFinder output from all 47 species Compare
Psilotum nudum HCCA Cluster_29 0.024 OrthoFinder output from all 47 species Compare
Psilotum nudum HCCA Cluster_41 0.027 OrthoFinder output from all 47 species Compare
Psilotum nudum HCCA Cluster_77 0.016 OrthoFinder output from all 47 species Compare
Psilotum nudum HCCA Cluster_81 0.024 OrthoFinder output from all 47 species Compare
Psilotum nudum HCCA Cluster_83 0.02 OrthoFinder output from all 47 species Compare
Psilotum nudum HCCA Cluster_87 0.015 OrthoFinder output from all 47 species Compare
Physcomitrella patens HCCA Cluster_72 0.016 OrthoFinder output from all 47 species Compare
Pyrrosia piloselloides HCCA Cluster_142 0.028 OrthoFinder output from all 47 species Compare
Pyrrosia piloselloides HCCA Cluster_268 0.016 OrthoFinder output from all 47 species Compare
Salvinia molesta HCCA Cluster_141 0.085 OrthoFinder output from all 47 species Compare
Salvinia molesta HCCA Cluster_172 0.053 OrthoFinder output from all 47 species Compare
Salvinia molesta HCCA Cluster_181 0.065 OrthoFinder output from all 47 species Compare
Salvinia cucullata HCCA Cluster_1 0.018 OrthoFinder output from all 47 species Compare
Salvinia cucullata HCCA Cluster_4 0.029 OrthoFinder output from all 47 species Compare
Salvinia cucullata HCCA Cluster_8 0.016 OrthoFinder output from all 47 species Compare
Salvinia cucullata HCCA Cluster_22 0.019 OrthoFinder output from all 47 species Compare
Salvinia cucullata HCCA Cluster_33 0.052 OrthoFinder output from all 47 species Compare
Salvinia cucullata HCCA Cluster_36 0.02 OrthoFinder output from all 47 species Compare
Salvinia cucullata HCCA Cluster_42 0.018 OrthoFinder output from all 47 species Compare
Salvinia cucullata HCCA Cluster_58 0.028 OrthoFinder output from all 47 species Compare
Salvinia cucullata HCCA Cluster_61 0.02 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_19 0.046 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_33 0.017 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_53 0.045 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_74 0.06 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_130 0.023 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_155 0.043 OrthoFinder output from all 47 species Compare
Selaginella moellendorffii HCCA Cluster_64 0.052 OrthoFinder output from all 47 species Compare
Selaginella moellendorffii HCCA Cluster_69 0.024 OrthoFinder output from all 47 species Compare
Selaginella moellendorffii HCCA Cluster_82 0.028 OrthoFinder output from all 47 species Compare
Stenochlaena palustris HCCA Cluster_8 0.053 OrthoFinder output from all 47 species Compare
Stenochlaena palustris HCCA Cluster_56 0.039 OrthoFinder output from all 47 species Compare
Stenochlaena palustris HCCA Cluster_84 0.101 OrthoFinder output from all 47 species Compare
Stenochlaena palustris HCCA Cluster_138 0.015 OrthoFinder output from all 47 species Compare
Stenochlaena palustris HCCA Cluster_210 0.019 OrthoFinder output from all 47 species Compare
Tectaria incisa HCCA Cluster_45 0.019 OrthoFinder output from all 47 species Compare
Tectaria incisa HCCA Cluster_73 0.046 OrthoFinder output from all 47 species Compare
Tectaria incisa HCCA Cluster_141 0.029 OrthoFinder output from all 47 species Compare
Tectaria incisa HCCA Cluster_172 0.017 OrthoFinder output from all 47 species Compare
Vitis vinifera HCCA Cluster_30 0.028 OrthoFinder output from all 47 species Compare
Vitis vinifera HCCA Cluster_75 0.101 OrthoFinder output from all 47 species Compare
Vitis vinifera HCCA Cluster_95 0.1 OrthoFinder output from all 47 species Compare
Zea mays HCCA Cluster_59 0.025 OrthoFinder output from all 47 species Compare
Zea mays HCCA Cluster_65 0.029 OrthoFinder output from all 47 species Compare
Zea mays HCCA Cluster_93 0.018 OrthoFinder output from all 47 species Compare
Zea mays HCCA Cluster_120 0.016 OrthoFinder output from all 47 species Compare
Zea mays HCCA Cluster_137 0.038 OrthoFinder output from all 47 species Compare
Zea mays HCCA Cluster_163 0.028 OrthoFinder output from all 47 species Compare
Zea mays HCCA Cluster_183 0.026 OrthoFinder output from all 47 species Compare
Arabidopsis thaliana HCCA Cluster_13 0.022 OrthoFinder output from all 47 species Compare
Arabidopsis thaliana HCCA Cluster_24 0.027 OrthoFinder output from all 47 species Compare
Arabidopsis thaliana HCCA Cluster_65 0.028 OrthoFinder output from all 47 species Compare
Arabidopsis thaliana HCCA Cluster_94 0.015 OrthoFinder output from all 47 species Compare
Arabidopsis thaliana HCCA Cluster_96 0.028 OrthoFinder output from all 47 species Compare
Arabidopsis thaliana HCCA Cluster_97 0.016 OrthoFinder output from all 47 species Compare
Sequences (189) (download table)

InterPro Domains

GO Terms

Family Terms