Dcu_g23538

Description : EC_6.1 ligase forming carbon-oxygen bond & original description: none

Gene families : OG0003806 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003806_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Dcu_g23538

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00036p00173790	evm_27.TU.AmTr_v1...	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.02	OrthoFinder output from all 47 species
Adi_g059090	No alias	EC_6.1 ligase forming carbon-oxygen bond & original...	0.03	OrthoFinder output from all 47 species
Ala_g16638	No alias	EC_6.1 ligase forming carbon-oxygen bond & original...	0.07	OrthoFinder output from all 47 species
Als_g01962	No alias	EC_6.1 ligase forming carbon-oxygen bond & original...	0.05	OrthoFinder output from all 47 species
Ceric.15G036400.1	Ceric.15G036400	EC_6.1 ligase forming carbon-oxygen bond & original...	0.09	OrthoFinder output from all 47 species
Cre16.g651750	No alias	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.01	OrthoFinder output from all 47 species
Dde_g09176	No alias	EC_6.1 ligase forming carbon-oxygen bond & original...	0.04	OrthoFinder output from all 47 species
Gb_05984	No alias	isoleucine-tRNA ligase	0.04	OrthoFinder output from all 47 species
LOC_Os06g43760.1	LOC_Os06g43760	isoleucine-tRNA ligase	0.05	OrthoFinder output from all 47 species
Len_g41130	No alias	EC_6.1 ligase forming carbon-oxygen bond & original...	0.03	OrthoFinder output from all 47 species
Lfl_g04993	No alias	EC_6.1 ligase forming carbon-oxygen bond & original...	0.03	OrthoFinder output from all 47 species
MA_10433439g0010	No alias	Isoleucine--tRNA ligase, cytoplasmic OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
MA_496893g0010	No alias	Isoleucine--tRNA ligase, cytoplasmic OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Mp6g20330.1	No alias	isoleucine-tRNA ligase	0.05	OrthoFinder output from all 47 species
Ore_g36476	No alias	EC_6.1 ligase forming carbon-oxygen bond & original...	0.03	OrthoFinder output from all 47 species
Ppi_g03990	No alias	EC_6.1 ligase forming carbon-oxygen bond & original...	0.04	OrthoFinder output from all 47 species
Smo153639	No alias	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.05	OrthoFinder output from all 47 species
Solyc11g012140.2.1	Solyc11g012140	isoleucine-tRNA ligase	0.06	OrthoFinder output from all 47 species
Spa_g12281	No alias	EC_6.1 ligase forming carbon-oxygen bond & original...	0.04	OrthoFinder output from all 47 species
Zm00001e030455_P003	Zm00001e030455	isoleucine-tRNA ligase	0.04	OrthoFinder output from all 47 species
Zm00001e037466_P001	Zm00001e037466	isoleucine-tRNA ligase	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEA	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006418	tRNA aminoacylation for protein translation	IEA	Interproscan
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043038	amino acid activation	None	Extended
BP	GO:0043039	tRNA aminoacylation	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140101	catalytic activity, acting on a tRNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0004672	protein kinase activity	IEP	HCCA
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	HCCA
MF	GO:0004843	cysteine-type deubiquitinase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
MF	GO:0008234	cysteine-type peptidase activity	IEP	HCCA
MF	GO:0015399	primary active transmembrane transporter activity	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
BP	GO:0016567	protein ubiquitination	IEP	HCCA
BP	GO:0016579	protein deubiquitination	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
MF	GO:0019783	ubiquitin-like protein peptidase activity	IEP	HCCA
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
BP	GO:0032446	protein modification by small protein conjugation	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
BP	GO:0070646	protein modification by small protein removal	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:0101005	deubiquitinase activity	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA
MF	GO:0140359	ABC-type transporter activity	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002300	aa-tRNA-synth_Ia	19	679
IPR013155	M/V/L/I-tRNA-synth_anticd-bd	735	885

External Links

No external refs found!

Dcu_g23538

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation