1. Home
  2. Species
  3. Dicranopteris curranii
  4. Sequence
  5. Dcu_g22754

Dcu_g22754 (SUF4)


Aliases : SUF4

Description : FLC-binding component *(SUF4) of FRI-C transcription effector complex & original description: none


Gene families : OG0002334 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002334_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g22754
Cluster HCCA: Cluster_57

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00011p00256770 SUF4,... RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.06 OrthoFinder output from all 47 species
AT1G30970 SUF4 zinc finger (C2H2 type) family protein 0.04 OrthoFinder output from all 47 species
Adi_g104400 SUF4 FLC-binding component *(SUF4) of FRI-C transcription... 0.03 OrthoFinder output from all 47 species
Aev_g09455 SUF4 FLC-binding component *(SUF4) of FRI-C transcription... 0.04 OrthoFinder output from all 47 species
Als_g54932 SUF4 FLC-binding component *(SUF4) of FRI-C transcription... 0.07 OrthoFinder output from all 47 species
Als_g58747 SUF4 FLC-binding component *(SUF4) of FRI-C transcription... 0.02 OrthoFinder output from all 47 species
Aop_g22046 SUF4 FLC-binding component *(SUF4) of FRI-C transcription... 0.02 OrthoFinder output from all 47 species
Cba_g25906 SUF4 FLC-binding component *(SUF4) of FRI-C transcription... 0.04 OrthoFinder output from all 47 species
Ceric.18G072400.1 SUF4, Ceric.18G072400 FLC-binding component *(SUF4) of FRI-C transcription... 0.05 OrthoFinder output from all 47 species
Ceric.31G034100.1 SUF4, Ceric.31G034100 FLC-binding component *(SUF4) of FRI-C transcription... 0.04 OrthoFinder output from all 47 species
GSVIVT01012145001 SUF4 RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.04 OrthoFinder output from all 47 species
GSVIVT01015880001 SUF4 RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.02 OrthoFinder output from all 47 species
LOC_Os09g38790.1 SUF4, LOC_Os09g38790 C2H2 zinc finger transcription factor 0.05 OrthoFinder output from all 47 species
Lfl_g12714 SUF4 FLC-binding component *(SUF4) of FRI-C transcription... 0.1 OrthoFinder output from all 47 species
MA_10435270g0010 SUF4 C2H2 zinc finger transcription factor 0.04 OrthoFinder output from all 47 species
Mp4g13860.1 SUF4 C2H2 zinc finger transcription factor 0.02 OrthoFinder output from all 47 species
Nbi_g26521 SUF4 FLC-binding component *(SUF4) of FRI-C transcription... 0.04 OrthoFinder output from all 47 species
Pir_g07069 SUF4 FLC-binding component *(SUF4) of FRI-C transcription... 0.03 OrthoFinder output from all 47 species
Pnu_g09182 SUF4 FLC-binding component *(SUF4) of FRI-C transcription... 0.02 OrthoFinder output from all 47 species
Pnu_g24490 SUF4 FLC-binding component *(SUF4) of FRI-C transcription... 0.03 OrthoFinder output from all 47 species
Ppi_g12837 SUF4 FLC-binding component *(SUF4) of FRI-C transcription... 0.04 OrthoFinder output from all 47 species
Sam_g35816 No alias FLC-binding component *(SUF4) of FRI-C transcription... 0.06 OrthoFinder output from all 47 species
Sam_g35817 No alias FLC-binding component *(SUF4) of FRI-C transcription... 0.03 OrthoFinder output from all 47 species
Solyc02g032120.3.1 SUF4, Solyc02g032120 C2H2 zinc finger transcription factor 0.02 OrthoFinder output from all 47 species
Solyc02g081620.3.1 SUF4, Solyc02g081620 C2H2 zinc finger transcription factor 0.02 OrthoFinder output from all 47 species
Spa_g16449 SUF4 FLC-binding component *(SUF4) of FRI-C transcription... 0.07 OrthoFinder output from all 47 species
Tin_g23103 SUF4 FLC-binding component *(SUF4) of FRI-C transcription... 0.03 OrthoFinder output from all 47 species
Zm00001e010342_P005 SUF4, Zm00001e010342 C2H2 zinc finger transcription factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
MF GO:0004652 polynucleotide adenylyltransferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005685 U1 snRNP IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006376 mRNA splice site selection IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043631 RNA polyadenylation IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
MF GO:0070566 adenylyltransferase activity IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!