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  5. Dcu_g19950

Dcu_g19950


Description : subfamily ABCD transporter & original description: none


Gene families : OG0002493 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002493_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g19950
Cluster HCCA: Cluster_168

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00071p00199450 evm_27.TU.AmTr_v1... Solute transport.primary active transport.ABC... 0.04 OrthoFinder output from all 47 species
Aspi01Gene21853.t1 Aspi01Gene21853 subfamily ABCD transporter & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.32G010600.1 Ceric.32G010600 subfamily ABCD transporter & original description:... 0.03 OrthoFinder output from all 47 species
Dde_g00832 No alias subfamily ABCD transporter & original description: none 0.04 OrthoFinder output from all 47 species
LOC_Os01g11946.1 LOC_Os01g11946 subfamily ABCD transporter 0.02 OrthoFinder output from all 47 species
Lfl_g40224 No alias subfamily ABCD transporter & original description: none 0.04 OrthoFinder output from all 47 species
MA_10436224g0010 No alias subfamily ABCD transporter 0.03 OrthoFinder output from all 47 species
Mp2g18020.1 No alias subfamily ABCD transporter 0.02 OrthoFinder output from all 47 species
Ore_g42023 No alias subfamily ABCD transporter & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g15535 No alias subfamily ABCD transporter & original description: none 0.02 OrthoFinder output from all 47 species
Solyc12g017420.2.1 Solyc12g017420 subfamily ABCD transporter 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008175 tRNA methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:0140673 transcription elongation-coupled chromatin remodeling IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR011527 ABC1_TM_dom 142 400
IPR003439 ABC_transporter-like_ATP-bd 517 740
No external refs found!