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  5. Dcu_g18942

Dcu_g18942 (SNL4)


Aliases : SNL4

Description : component *(SNL) of histone deacetylase machineries & original description: none


Gene families : OG0000547 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000547_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g18942

Target Alias Description ECC score Gene Family Method Actions
AT1G10450 SNL6 SIN3-like 6 0.06 OrthoFinder output from all 47 species
AT1G24190 SNL3, ATSIN3, SIN3 SIN3-like 3 0.08 OrthoFinder output from all 47 species
AT1G70060 SNL4 SIN3-like 4 0.03 OrthoFinder output from all 47 species
AT3G01320 SNL1 SIN3-like 1 0.1 OrthoFinder output from all 47 species
AT5G15020 SNL2 SIN3-like 2 0.08 OrthoFinder output from all 47 species
Adi_g013447 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
Adi_g058426 SNL4 component *(SNL) of histone deacetylase machineries &... 0.06 OrthoFinder output from all 47 species
Adi_g088432 SNL3, ATSIN3, SIN3 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g103364 SNL4 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g103365 SNL4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g117146 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Aev_g21851 SNL4 component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
Ala_g17667 SNL4 component *(SNL) of histone deacetylase machineries &... 0.06 OrthoFinder output from all 47 species
Ala_g21578 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.06 OrthoFinder output from all 47 species
Als_g16311 SNL3, ATSIN3, SIN3 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g22302 SNL4 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Als_g42067 SNL4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g52097 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.05 OrthoFinder output from all 47 species
Als_g52098 SNL2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g56003 SNL2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27014 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.07 OrthoFinder output from all 47 species
Aob_g29157 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.07 OrthoFinder output from all 47 species
Aop_g00817 SNL4 component *(SNL) of histone deacetylase machineries &... 0.06 OrthoFinder output from all 47 species
Aspi01Gene27809.t1 SNL4, Aspi01Gene27809 component *(SNL) of histone deacetylase machineries &... 0.05 OrthoFinder output from all 47 species
Aspi01Gene46934.t1 SNL3, ATSIN3,... component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
Aspi01Gene56982.t1 SNL3, ATSIN3,... component *(SNL) of histone deacetylase machineries &... 0.06 OrthoFinder output from all 47 species
Azfi_s0008.g011658 SNL4 component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
Azfi_s0048.g030537 SNL4 component *(SNL) of histone deacetylase machineries &... 0.05 OrthoFinder output from all 47 species
Cba_g06817 SNL4 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g16029 SNL4 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Cba_g77516 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.05 OrthoFinder output from all 47 species
Ceric.02G103800.1 SNL4, Ceric.02G103800 component *(SNL) of histone deacetylase machineries &... 0.07 OrthoFinder output from all 47 species
Ceric.31G072300.1 SNL4, Ceric.31G072300 component *(SNL) of histone deacetylase machineries &... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001155.28 SNL3, ATSIN3, SIN3 Paired amphipathic helix protein Sin3-like 1... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021234.23 SNL5 Paired amphipathic helix protein Sin3-like 3... 0.01 OrthoFinder output from all 47 species
Dde_g03508 SNL4 component *(SNL) of histone deacetylase machineries &... 0.02 OrthoFinder output from all 47 species
Dde_g18720 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.06 OrthoFinder output from all 47 species
Ehy_g08326 SNL3, ATSIN3, SIN3 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g10036 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
GSVIVT01020136001 SNL3, ATSIN3, SIN3 Chromatin organisation.histone modifications.histone... 0.04 OrthoFinder output from all 47 species
GSVIVT01032579001 SNL2 Chromatin organisation.histone modifications.histone... 0.07 OrthoFinder output from all 47 species
Gb_35988 SNL4 component SNL of histone deacetylase machineries 0.05 OrthoFinder output from all 47 species
LOC_Os05g01020.2 SNL4, LOC_Os05g01020 component SNL of histone deacetylase machineries 0.08 OrthoFinder output from all 47 species
Len_g04844 SNL4 component *(SNL) of histone deacetylase machineries &... 0.09 OrthoFinder output from all 47 species
Len_g20482 SNL4 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Lfl_g03500 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.05 OrthoFinder output from all 47 species
Lfl_g03517 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.1 OrthoFinder output from all 47 species
MA_18241g0010 SNL4 component SNL of histone deacetylase machineries 0.07 OrthoFinder output from all 47 species
Mp3g02880.1 SNL4 component SNL of histone deacetylase machineries 0.02 OrthoFinder output from all 47 species
Mp7g11300.1 SNL5 Paired amphipathic helix protein Sin3-like 2... 0.03 OrthoFinder output from all 47 species
Msp_g06593 SNL4 component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
Nbi_g03860 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.06 OrthoFinder output from all 47 species
Ore_g04819 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Ore_g30140 SNL4 component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
Ore_g30141 SNL2 component *(SNL) of histone deacetylase machineries &... 0.02 OrthoFinder output from all 47 species
Pir_g13056 SNL4 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Pir_g18041 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Ppi_g01419 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.02 OrthoFinder output from all 47 species
Ppi_g09115 SNL4 component *(SNL) of histone deacetylase machineries &... 0.06 OrthoFinder output from all 47 species
Sam_g14557 No alias component *(SNL) of histone deacetylase machineries &... 0.09 OrthoFinder output from all 47 species
Sam_g25571 No alias component *(SNL) of histone deacetylase machineries &... 0.07 OrthoFinder output from all 47 species
Sam_g29972 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g35727 No alias component *(SNL) of histone deacetylase machineries &... 0.02 OrthoFinder output from all 47 species
Smo440352 SNL4 Chromatin organisation.histone modifications.histone... 0.07 OrthoFinder output from all 47 species
Solyc02g067570.3.1 SNL2, Solyc02g067570 component SNL of histone deacetylase machineries 0.09 OrthoFinder output from all 47 species
Solyc02g087360.4.1 SNL2, Solyc02g087360 component SNL of histone deacetylase machineries 0.08 OrthoFinder output from all 47 species
Spa_g18268 SNL4 component *(SNL) of histone deacetylase machineries &... 0.06 OrthoFinder output from all 47 species
Tin_g13041 SNL4 component *(SNL) of histone deacetylase machineries &... 0.06 OrthoFinder output from all 47 species
Tin_g19320 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
Zm00001e017111_P002 SNL4, Zm00001e017111 component SNL of histone deacetylase machineries 0.13 OrthoFinder output from all 47 species
Zm00001e018079_P001 SNL4, Zm00001e018079 Paired amphipathic helix protein Sin3-like 2... 0.02 OrthoFinder output from all 47 species
Zm00001e025644_P001 SNL4, Zm00001e025644 component SNL of histone deacetylase machineries 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004402 histone acetyltransferase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0006475 internal protein amino acid acetylation IEP HCCA
BP GO:0006476 protein deacetylation IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0010921 regulation of phosphatase activity IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016573 histone acetylation IEP HCCA
BP GO:0016575 histone deacetylation IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0018393 internal peptidyl-lysine acetylation IEP HCCA
BP GO:0018394 peptidyl-lysine acetylation IEP HCCA
BP GO:0019220 regulation of phosphate metabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0019902 phosphatase binding IEP HCCA
MF GO:0019903 protein phosphatase binding IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
CC GO:0030684 preribosome IEP HCCA
BP GO:0031399 regulation of protein modification process IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0034212 peptide N-acetyltransferase activity IEP HCCA
BP GO:0035303 regulation of dephosphorylation IEP HCCA
BP GO:0035304 regulation of protein dephosphorylation IEP HCCA
BP GO:0035601 protein deacylation IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
BP GO:0043666 regulation of phosphoprotein phosphatase activity IEP HCCA
BP GO:0050790 regulation of catalytic activity IEP HCCA
BP GO:0051174 regulation of phosphorus metabolic process IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0051336 regulation of hydrolase activity IEP HCCA
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
BP GO:0098732 macromolecule deacylation IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
MF GO:2001070 starch binding IEP HCCA
InterPro domains Description Start Stop
IPR013194 HDAC_interact_dom 512 604
IPR003822 PAH 143 187
IPR003822 PAH 367 411
IPR003822 PAH 59 102
IPR031693 Sin3_C 1246 1493
No external refs found!