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  5. Dcu_g13304

Dcu_g13304


Description : component *(NOT3) of mRNA deadenylation CCR4-NOT complex & original description: none


Gene families : OG0003951 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003951_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g13304

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00093740 evm_27.TU.AmTr_v1... RNA processing.RNA decay.deadenylation-dependent... 0.05 OrthoFinder output from all 47 species
AMTR_s00012p00217710 evm_27.TU.AmTr_v1... RNA processing.RNA decay.deadenylation-dependent... 0.05 OrthoFinder output from all 47 species
AT5G18230 No alias transcription regulator NOT2/NOT3/NOT5 family protein 0.04 OrthoFinder output from all 47 species
Adi_g021088 No alias component *(NOT3) of mRNA deadenylation CCR4-NOT complex... 0.03 OrthoFinder output from all 47 species
Aev_g14080 No alias component *(NOT3) of mRNA deadenylation CCR4-NOT complex... 0.04 OrthoFinder output from all 47 species
Ala_g02487 No alias component *(NOT3) of mRNA deadenylation CCR4-NOT complex... 0.05 OrthoFinder output from all 47 species
Ceric.09G054000.1 Ceric.09G054000 component *(NOT3) of mRNA deadenylation CCR4-NOT complex... 0.08 OrthoFinder output from all 47 species
Cre04.g227350 No alias RNA processing.RNA decay.deadenylation-dependent... 0.03 OrthoFinder output from all 47 species
GSVIVT01033382001 No alias RNA processing.RNA decay.deadenylation-dependent... 0.08 OrthoFinder output from all 47 species
LOC_Os03g44900.1 LOC_Os03g44900 component NOT3/5 of mRNA deadenylation CCR4-NOT complex 0.04 OrthoFinder output from all 47 species
Len_g47292 No alias component *(NOT3) of mRNA deadenylation CCR4-NOT complex... 0.05 OrthoFinder output from all 47 species
Lfl_g02194 No alias component *(NOT3) of mRNA deadenylation CCR4-NOT complex... 0.08 OrthoFinder output from all 47 species
MA_10429335g0020 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_16801g0010 No alias component NOT3/5 of mRNA deadenylation CCR4-NOT complex 0.02 OrthoFinder output from all 47 species
Mp5g06180.1 No alias component NOT3/5 of mRNA deadenylation CCR4-NOT complex 0.02 OrthoFinder output from all 47 species
Ore_g18536 No alias component *(NOT3) of mRNA deadenylation CCR4-NOT complex... 0.02 OrthoFinder output from all 47 species
Pnu_g13489 No alias component *(NOT3) of mRNA deadenylation CCR4-NOT complex... 0.02 OrthoFinder output from all 47 species
Ppi_g05930 No alias component *(NOT3) of mRNA deadenylation CCR4-NOT complex... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0040.g012446 No alias component *(NOT3) of mRNA deadenylation CCR4-NOT complex... 0.03 OrthoFinder output from all 47 species
Solyc12g019860.2.1 Solyc12g019860 component NOT3/5 of mRNA deadenylation CCR4-NOT complex 0.05 OrthoFinder output from all 47 species
Tin_g05223 No alias component *(NOT3) of mRNA deadenylation CCR4-NOT complex... 0.03 OrthoFinder output from all 47 species
Zm00001e005243_P002 Zm00001e005243 component NOT3/5 of mRNA deadenylation CCR4-NOT complex 0.05 OrthoFinder output from all 47 species
Zm00001e012376_P003 Zm00001e012376 component NOT3/5 of mRNA deadenylation CCR4-NOT complex 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004402 histone acetyltransferase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004814 arginine-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006420 arginyl-tRNA aminoacylation IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0006475 internal protein amino acid acetylation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010921 regulation of phosphatase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016573 histone acetylation IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0018393 internal peptidyl-lysine acetylation IEP HCCA
BP GO:0018394 peptidyl-lysine acetylation IEP HCCA
BP GO:0019220 regulation of phosphate metabolic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0019902 phosphatase binding IEP HCCA
MF GO:0019903 protein phosphatase binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0031399 regulation of protein modification process IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0034212 peptide N-acetyltransferase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0035303 regulation of dephosphorylation IEP HCCA
BP GO:0035304 regulation of protein dephosphorylation IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
MF GO:0043021 ribonucleoprotein complex binding IEP HCCA
MF GO:0043022 ribosome binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0043666 regulation of phosphoprotein phosphatase activity IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0050790 regulation of catalytic activity IEP HCCA
BP GO:0051174 regulation of phosphorus metabolic process IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0051336 regulation of hydrolase activity IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR007207 Not_N 4 235
IPR007282 NOT2/3/5_C 744 877
No external refs found!