Dcu_g13134 (VAR2, FTSH2)

Aliases : VAR2, FTSH2

Description : component *(FtsH1/2/5/6/8) of FtsH plastidial protease complexes & original description: none

Gene families : OG0001722 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001722_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Dcu_g13134
Cluster	HCCA: Cluster_25

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00010p00262430	ATFTSH6, FTSH6,...	ATP-dependent zinc metalloprotease FTSH 6, chloroplastic...	0.01	OrthoFinder output from all 47 species
AMTR_s00106p00108310	VAR2, FTSH2,...	Protein degradation.peptidase families.metallopeptidase...	0.08	OrthoFinder output from all 47 species
AT3G02450	No alias	cell division protein ftsH, putative	0.02	OrthoFinder output from all 47 species
Adi_g087056	FTSH8	component *(FtsH1/2/5/6/8) of FtsH plastidial protease...	0.02	OrthoFinder output from all 47 species
Adi_g087057	FTSH8	component *(FtsH1/2/5/6/8) of FtsH plastidial protease...	0.05	OrthoFinder output from all 47 species
Adi_g114970	VAR2, FTSH2	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g02360	FTSH8	component *(FtsH1/2/5/6/8) of FtsH plastidial protease...	0.13	OrthoFinder output from all 47 species
Ala_g14174	FTSH8	component *(FtsH1/2/5/6/8) of FtsH plastidial protease...	0.05	OrthoFinder output from all 47 species
Als_g07586	FTSH8	component *(FtsH1/2/5/6/8) of FtsH plastidial protease...	0.08	OrthoFinder output from all 47 species
Als_g20560	FTSH8	component *(FtsH1/2/5/6/8) of FtsH plastidial protease...	0.11	OrthoFinder output from all 47 species
Aob_g10132	No alias	not classified & original description: none	0.08	OrthoFinder output from all 47 species
Aob_g17362	VAR2, FTSH2	component *(FtsH1/2/5/6/8) of FtsH plastidial protease...	0.11	OrthoFinder output from all 47 species
Aop_g14163	FTSH8	component *(FtsH1/2/5/6/8) of FtsH plastidial protease...	0.06	OrthoFinder output from all 47 species
Aspi01Gene12384.t1	FTSH8, Aspi01Gene12384	component *(FtsH1/2/5/6/8) of FtsH plastidial protease...	0.05	OrthoFinder output from all 47 species
Azfi_s0022.g016135	FTSH8	component *(FtsH1/2/5/6/8) of FtsH plastidial protease...	0.07	OrthoFinder output from all 47 species
Cba_g13333	FTSH8	component *(FtsH1/2/5/6/8) of FtsH plastidial protease...	0.06	OrthoFinder output from all 47 species
Cba_g75374	VAR2, FTSH2	EXECUTER-cleavage protease *(FtsH2) & original description: none	0.06	OrthoFinder output from all 47 species
Ceric.03G093200.1	FTSH8, Ceric.03G093200	component *(FtsH1/2/5/6/8) of FtsH plastidial protease...	0.04	OrthoFinder output from all 47 species
Ceric.22G054100.1	FTSH8, Ceric.22G054100	component *(FtsH1/2/5/6/8) of FtsH plastidial protease...	0.07	OrthoFinder output from all 47 species
Cre09.g393950	No alias	Probable inactive ATP-dependent zinc metalloprotease...	0.02	OrthoFinder output from all 47 species
Cre17.g720050	FTSH8	Protein degradation.peptidase families.metallopeptidase...	0.03	OrthoFinder output from all 47 species
Dac_g10534	FTSH8	component *(FtsH1/2/5/6/8) of FtsH plastidial protease...	0.05	OrthoFinder output from all 47 species
Dde_g07705	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g23743	FTSH8	component *(FtsH1/2/5/6/8) of FtsH plastidial protease...	0.1	OrthoFinder output from all 47 species
Ehy_g03938	FTSH8	component *(FtsH1/2/5/6/8) of FtsH plastidial protease...	0.08	OrthoFinder output from all 47 species
GSVIVT01020760001	VAR2, FTSH2	Protein degradation.peptidase families.metallopeptidase...	0.05	OrthoFinder output from all 47 species
Gb_12830	FTSH8	component FtsH1\|2\|5\|6\|8 of FtsH plastidial protease complexes	0.08	OrthoFinder output from all 47 species
Gb_32360	No alias	component FtsHi of protein translocation ATPase motor complex	0.02	OrthoFinder output from all 47 species
LOC_Os06g45820.1	VAR2, FTSH2,...	component FtsH1\|2\|5\|6\|8 of FtsH plastidial protease complexes	0.05	OrthoFinder output from all 47 species
Len_g21745	FTSH8	component *(FtsH1/2/5/6/8) of FtsH plastidial protease...	0.08	OrthoFinder output from all 47 species
Len_g44862	FTSH8	component *(FtsH1/2/5/6/8) of FtsH plastidial protease...	0.1	OrthoFinder output from all 47 species
Lfl_g04989	FTSH8	component *(FtsH1/2/5/6/8) of FtsH plastidial protease...	0.05	OrthoFinder output from all 47 species
Mp4g19200.1	VAR2, FTSH2	component FtsH1\|2\|5\|6\|8 of FtsH plastidial protease complexes	0.06	OrthoFinder output from all 47 species
Msp_g02086	VAR2, FTSH2	component *(FtsH1/2/5/6/8) of FtsH plastidial protease...	0.08	OrthoFinder output from all 47 species
Msp_g07153	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Nbi_g11426	FTSH8	component *(FtsH1/2/5/6/8) of FtsH plastidial protease...	0.1	OrthoFinder output from all 47 species
Ore_g26838	VAR2, FTSH2	component *(FtsH1/2/5/6/8) of FtsH plastidial protease...	0.05	OrthoFinder output from all 47 species
Ore_g45571	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g09681	FTSH8	component *(FtsH1/2/5/6/8) of FtsH plastidial protease...	0.09	OrthoFinder output from all 47 species
Pir_g14965	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g17712	FTSH8	component *(FtsH1/2/5/6/8) of FtsH plastidial protease...	0.06	OrthoFinder output from all 47 species
Sacu_v1.1_s0022.g008575	FTSH8	not classified & original description: CDS=1-1161	0.04	OrthoFinder output from all 47 species
Sam_g18762	No alias	component *(FtsH1/2/5/6/8) of FtsH plastidial protease...	0.06	OrthoFinder output from all 47 species
Sam_g37450	No alias	component *(FtsH1/2/5/6/8) of FtsH plastidial protease...	0.08	OrthoFinder output from all 47 species
Smo149856	VAR2, FTSH2	Protein degradation.peptidase families.metallopeptidase...	0.05	OrthoFinder output from all 47 species
Smo152929	FTSH8	Protein degradation.peptidase families.metallopeptidase...	0.02	OrthoFinder output from all 47 species
Solyc07g055320.4.1	VAR2, FTSH2,...	component FtsH1\|2\|5\|6\|8 of FtsH plastidial protease complexes	0.09	OrthoFinder output from all 47 species
Spa_g04708	FTSH8	component *(FtsH1/2/5/6/8) of FtsH plastidial protease...	0.03	OrthoFinder output from all 47 species
Spa_g25819	FTSH8	component *(FtsH1/2/5/6/8) of FtsH plastidial protease...	0.07	OrthoFinder output from all 47 species
Tin_g04117	FTSH8	component *(FtsH1/2/5/6/8) of FtsH plastidial protease...	0.08	OrthoFinder output from all 47 species
Zm00001e007868_P001	Zm00001e007868	component FtsHi of protein translocation ATPase motor complex	0.04	OrthoFinder output from all 47 species
Zm00001e030358_P003	VAR2, FTSH2,...	component FtsH1\|2\|5\|6\|8 of FtsH plastidial protease complexes	0.03	OrthoFinder output from all 47 species
Zm00001e037753_P001	VAR2, FTSH2,...	component FtsH1\|2\|5\|6\|8 of FtsH plastidial protease complexes	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004175	endopeptidase activity	None	Extended
MF	GO:0004176	ATP-dependent peptidase activity	IEA	Interproscan
MF	GO:0004222	metalloendopeptidase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006508	proteolysis	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0008237	metallopeptidase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0004332	fructose-bisphosphate aldolase activity	IEP	HCCA
BP	GO:0006090	pyruvate metabolic process	IEP	HCCA
BP	GO:0006091	generation of precursor metabolites and energy	IEP	HCCA
BP	GO:0006096	glycolytic process	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006165	nucleoside diphosphate phosphorylation	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006757	ATP generation from ADP	IEP	HCCA
BP	GO:0006979	response to oxidative stress	IEP	HCCA
BP	GO:0009132	nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009135	purine nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009141	nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009144	purine nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009150	purine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009179	purine ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009185	ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009199	ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009259	ribonucleotide metabolic process	IEP	HCCA
BP	GO:0016052	carbohydrate catabolic process	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
MF	GO:0016830	carbon-carbon lyase activity	IEP	HCCA
MF	GO:0016832	aldehyde-lyase activity	IEP	HCCA
BP	GO:0019693	ribose phosphate metabolic process	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
BP	GO:0032787	monocarboxylic acid metabolic process	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
BP	GO:0046031	ADP metabolic process	IEP	HCCA
BP	GO:0046034	ATP metabolic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0046939	nucleotide phosphorylation	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0110102	ribulose bisphosphate carboxylase complex assembly	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR041569	AAA_lid_3	415	458
IPR003959	ATPase_AAA_core	260	391
IPR000642	Peptidase_M41	474	663

External Links

No external refs found!

Dcu_g13134 (VAR2, FTSH2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation