Dcu_g11802 (54CP, SRP54CP, CPSRP54, FFC)

Aliases : 54CP, SRP54CP, CPSRP54, FFC

Description : component *(cpSRP54) of thylakoid membrane SRP insertion system & original description: none

Gene families : OG0005930 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005930_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Dcu_g11802

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00031p00204460	54CP, SRP54CP,...	Protein translocation.chloroplast.thylakoid membrane SRP...	0.04	OrthoFinder output from all 47 species
AT5G03940	54CP, SRP54CP,...	chloroplast signal recognition particle 54 kDa subunit	0.03	OrthoFinder output from all 47 species
Ala_g09277	54CP, SRP54CP,...	component *(cpSRP54) of thylakoid membrane SRP insertion...	0.04	OrthoFinder output from all 47 species
Als_g13104	54CP, SRP54CP,...	component *(cpSRP54) of thylakoid membrane SRP insertion...	0.06	OrthoFinder output from all 47 species
Aspi01Gene03016.t1	54CP, SRP54CP,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g29373	54CP, SRP54CP,...	component *(cpSRP54) of thylakoid membrane SRP insertion...	0.02	OrthoFinder output from all 47 species
Ceric.03G060800.1	54CP, SRP54CP,...	component *(cpSRP54) of thylakoid membrane SRP insertion...	0.06	OrthoFinder output from all 47 species
Cre11.g479750	54CP, SRP54CP,...	Protein translocation.chloroplast.thylakoid membrane SRP...	0.01	OrthoFinder output from all 47 species
Dde_g10157	54CP, SRP54CP,...	component *(cpSRP54) of thylakoid membrane SRP insertion...	0.03	OrthoFinder output from all 47 species
GSVIVT01033862001	54CP, SRP54CP,...	Protein translocation.chloroplast.thylakoid membrane SRP...	0.04	OrthoFinder output from all 47 species
LOC_Os11g05552.1	54CP, SRP54CP,...	Signal recognition particle 54 kDa protein,...	0.04	OrthoFinder output from all 47 species
LOC_Os11g05556.1	54CP, SRP54CP,...	component cpSRP54 of thylakoid membrane SRP insertion system	0.03	OrthoFinder output from all 47 species
Len_g09132	54CP, SRP54CP,...	component *(cpSRP54) of thylakoid membrane SRP insertion...	0.03	OrthoFinder output from all 47 species
MA_10274946g0010	54CP, SRP54CP,...	Signal recognition particle 54 kDa protein,...	0.03	OrthoFinder output from all 47 species
Mp1g05670.1	54CP, SRP54CP,...	component cpSRP54 of thylakoid membrane SRP insertion system	0.07	OrthoFinder output from all 47 species
Nbi_g12082	54CP, SRP54CP,...	component *(cpSRP54) of thylakoid membrane SRP insertion...	0.05	OrthoFinder output from all 47 species
Ore_g18771	54CP, SRP54CP,...	component *(cpSRP54) of thylakoid membrane SRP insertion...	0.03	OrthoFinder output from all 47 species
Sam_g29558	No alias	component *(cpSRP54) of thylakoid membrane SRP insertion...	0.04	OrthoFinder output from all 47 species
Solyc09g009940.3.1	54CP, SRP54CP,...	component cpSRP54 of thylakoid membrane SRP insertion system	0.02	OrthoFinder output from all 47 species
Zm00001e024147_P003	54CP, SRP54CP,...	component cpSRP54 of thylakoid membrane SRP insertion system	0.05	OrthoFinder output from all 47 species
Zm00001e039381_P004	54CP, SRP54CP,...	component cpSRP54 of thylakoid membrane SRP insertion system	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
BP	GO:0006605	protein targeting	None	Extended
BP	GO:0006612	protein targeting to membrane	None	Extended
BP	GO:0006613	cotranslational protein targeting to membrane	None	Extended
BP	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	IEA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033365	protein localization to organelle	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0045047	protein targeting to ER	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0051668	localization within membrane	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0070972	protein localization to endoplasmic reticulum	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0072594	establishment of protein localization to organelle	None	Extended
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	None	Extended
BP	GO:0072657	protein localization to membrane	None	Extended
BP	GO:0090150	establishment of protein localization to membrane	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000287	magnesium ion binding	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0004743	pyruvate kinase activity	IEP	HCCA
MF	GO:0004809	tRNA (guanine-N2-)-methyltransferase activity	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
BP	GO:0006082	organic acid metabolic process	IEP	HCCA
BP	GO:0006090	pyruvate metabolic process	IEP	HCCA
BP	GO:0006091	generation of precursor metabolites and energy	IEP	HCCA
BP	GO:0006096	glycolytic process	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006165	nucleoside diphosphate phosphorylation	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006757	ATP generation from ADP	IEP	HCCA
BP	GO:0006807	nitrogen compound metabolic process	IEP	HCCA
BP	GO:0008033	tRNA processing	IEP	HCCA
BP	GO:0008152	metabolic process	IEP	HCCA
MF	GO:0008170	N-methyltransferase activity	IEP	HCCA
MF	GO:0008173	RNA methyltransferase activity	IEP	HCCA
MF	GO:0008175	tRNA methyltransferase activity	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	HCCA
BP	GO:0009132	nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009135	purine nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009141	nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009144	purine nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009150	purine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009179	purine ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009185	ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009199	ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009259	ribonucleotide metabolic process	IEP	HCCA
BP	GO:0016052	carbohydrate catabolic process	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
MF	GO:0016423	tRNA (guanine) methyltransferase activity	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
BP	GO:0019693	ribose phosphate metabolic process	IEP	HCCA
BP	GO:0019752	carboxylic acid metabolic process	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0030955	potassium ion binding	IEP	HCCA
MF	GO:0031072	heat shock protein binding	IEP	HCCA
MF	GO:0031420	alkali metal ion binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0032787	monocarboxylic acid metabolic process	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
BP	GO:0043436	oxoacid metabolic process	IEP	HCCA
BP	GO:0044237	cellular metabolic process	IEP	HCCA
BP	GO:0044238	primary metabolic process	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA
BP	GO:0046031	ADP metabolic process	IEP	HCCA
BP	GO:0046034	ATP metabolic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
BP	GO:0046939	nucleotide phosphorylation	IEP	HCCA
MF	GO:0051082	unfolded protein binding	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR013822	Signal_recog_particl_SRP54_hlx	77	154
IPR004125	Signal_recog_particle_SRP54_M	398	497
IPR000897	SRP54_GTPase_dom	172	367

External Links

No external refs found!

Dcu_g11802 (54CP, SRP54CP, CPSRP54, FFC)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation