Dcu_g11670 (OVA5, ATKRS-2)

Aliases : OVA5, ATKRS-2

Description : lysine-tRNA ligase & original description: none

Gene families : OG0005865 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005865_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Dcu_g11670
Cluster	HCCA: Cluster_168

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00089p00093330	OVA5, ATKRS-2,...	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.04	OrthoFinder output from all 47 species
AT3G13490	OVA5, ATKRS-2	Lysyl-tRNA synthetase, class II	0.08	OrthoFinder output from all 47 species
Adi_g081278	OVA5, ATKRS-2	lysine-tRNA ligase & original description: none	0.06	OrthoFinder output from all 47 species
Als_g21504	OVA5, ATKRS-2	lysine-tRNA ligase & original description: none	0.05	OrthoFinder output from all 47 species
Aob_g03406	OVA5, ATKRS-2	lysine-tRNA ligase & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g69400	OVA5, ATKRS-2	lysine-tRNA ligase & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0008.g011549	OVA5, ATKRS-2	lysine-tRNA ligase & original description: CDS=158-1798	0.03	OrthoFinder output from all 47 species
Ceric.19G049100.1	OVA5, ATKRS-2,...	lysine-tRNA ligase & original description:...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001164.1	OVA5, ATKRS-2	No description available	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001164.2	OVA5, ATKRS-2	Lysine--tRNA ligase, chloroplastic/mitochondrial...	0.01	OrthoFinder output from all 47 species
GSVIVT01025473001	OVA5, ATKRS-2	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.02	OrthoFinder output from all 47 species
Gb_05325	OVA5, ATKRS-2	lysine-tRNA ligase	0.04	OrthoFinder output from all 47 species
LOC_Os02g41470.3	OVA5, ATKRS-2,...	lysine-tRNA ligase	0.05	OrthoFinder output from all 47 species
Len_g27813	OVA5, ATKRS-2	lysine-tRNA ligase & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g18377	OVA5, ATKRS-2	lysine-tRNA ligase & original description: none	0.03	OrthoFinder output from all 47 species
Mp7g09810.1	OVA5, ATKRS-2	lysine-tRNA ligase	0.03	OrthoFinder output from all 47 species
Nbi_g08031	OVA5, ATKRS-2	lysine-tRNA ligase & original description: none	0.05	OrthoFinder output from all 47 species
Pp3c19_5720V3.1	OVA5, ATKRS-2,...	Lysyl-tRNA synthetase, class II	0.02	OrthoFinder output from all 47 species
Ppi_g03084	OVA5, ATKRS-2	lysine-tRNA ligase & original description: none	0.04	OrthoFinder output from all 47 species
Sam_g15740	No alias	lysine-tRNA ligase & original description: none	0.06	OrthoFinder output from all 47 species
Smo79851	OVA5, ATKRS-2	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.04	OrthoFinder output from all 47 species
Zm00001e006285_P003	OVA5, ATKRS-2,...	lysine-tRNA ligase	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006418	tRNA aminoacylation for protein translation	IEA	Interproscan
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043038	amino acid activation	None	Extended
BP	GO:0043039	tRNA aminoacylation	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140101	catalytic activity, acting on a tRNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
BP	GO:0006163	purine nucleotide metabolic process	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
BP	GO:0009117	nucleotide metabolic process	IEP	HCCA
BP	GO:0009150	purine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009259	ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
MF	GO:0009982	pseudouridine synthase activity	IEP	HCCA
BP	GO:0015969	guanosine tetraphosphate metabolic process	IEP	HCCA
MF	GO:0016866	intramolecular transferase activity	IEP	HCCA
MF	GO:0016887	ATP hydrolysis activity	IEP	HCCA
BP	GO:0019637	organophosphate metabolic process	IEP	HCCA
BP	GO:0019693	ribose phosphate metabolic process	IEP	HCCA
MF	GO:0030246	carbohydrate binding	IEP	HCCA
MF	GO:0030247	polysaccharide binding	IEP	HCCA
BP	GO:0033865	nucleoside bisphosphate metabolic process	IEP	HCCA
BP	GO:0033875	ribonucleoside bisphosphate metabolic process	IEP	HCCA
BP	GO:0034032	purine nucleoside bisphosphate metabolic process	IEP	HCCA
BP	GO:0034035	purine ribonucleoside bisphosphate metabolic process	IEP	HCCA
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	HCCA
BP	GO:0072521	purine-containing compound metabolic process	IEP	HCCA
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	HCCA
MF	GO:2001070	starch binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004365	NA-bd_OB_tRNA	137	215
IPR004364	Aa-tRNA-synt_II	233	600

External Links

No external refs found!

Dcu_g11670 (OVA5, ATKRS-2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation