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  5. Dcu_g10965

Dcu_g10965 (LDL3)


Aliases : LDL3

Description : histone demethylase *(KDM1d) & original description: none


Gene families : OG0003426 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003426_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g10965
Cluster HCCA: Cluster_57

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00182p00016710 LDL3,... Chromatin organisation.histone modifications.histone... 0.09 OrthoFinder output from all 47 species
AT4G16310 LDL3 LSD1-like 3 0.19 OrthoFinder output from all 47 species
Adi_g011994 LDL3 histone demethylase *(KDM1d) & original description: none 0.09 OrthoFinder output from all 47 species
Aev_g06185 LDL3 histone demethylase *(KDM1d) & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g05833 LDL3 histone demethylase *(KDM1d) & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g11027 LDL3 histone demethylase *(KDM1d) & original description: none 0.06 OrthoFinder output from all 47 species
Als_g22303 LDL3 histone demethylase *(KDM1d) & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g13453 LDL3 histone demethylase *(KDM1d) & original description: none 0.09 OrthoFinder output from all 47 species
Aop_g25574 LDL3 histone demethylase *(KDM1d) & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g27045 LDL3 histone demethylase *(KDM1d) & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene66928.t1 LDL3, Aspi01Gene66928 histone demethylase *(KDM1d) & original description: none 0.07 OrthoFinder output from all 47 species
Azfi_s0054.g033788 LDL3 histone demethylase *(KDM1d) & original description: CDS=1-6162 0.07 OrthoFinder output from all 47 species
Ceric.04G013700.1 LDL3, Ceric.04G013700 histone demethylase *(KDM1d) & original description:... 0.19 OrthoFinder output from all 47 species
Ceric.12G094400.1 LDL3, Ceric.12G094400 histone demethylase *(KDM1d) & original description:... 0.14 OrthoFinder output from all 47 species
GSVIVT01009833001 LDL3 Lysine-specific histone demethylase 1 homolog 3... 0.12 OrthoFinder output from all 47 species
GSVIVT01009834001 LDL3 Lysine-specific histone demethylase 1 homolog 3... 0.15 OrthoFinder output from all 47 species
Gb_40614 LDL3 lysine-specific demethylase (LDL3) 0.1 OrthoFinder output from all 47 species
LOC_Os10g38850.1 LDL3, LOC_Os10g38850 lysine-specific demethylase (LDL3) 0.1 OrthoFinder output from all 47 species
Lfl_g04294 LDL3 histone demethylase *(KDM1d) & original description: none 0.12 OrthoFinder output from all 47 species
MA_120420g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_120420g0020 LDL3 lysine-specific demethylase (LDL3) 0.11 OrthoFinder output from all 47 species
MA_7050228g0010 LDL3 Lysine-specific histone demethylase 1 homolog 3... 0.02 OrthoFinder output from all 47 species
Msp_g14381 LDL3 histone demethylase *(KDM1d) & original description: none 0.09 OrthoFinder output from all 47 species
Msp_g38960 LDL3 histone demethylase *(KDM1d) & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g08319 LDL3 histone demethylase *(KDM1d) & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g40775 LDL3 histone demethylase *(KDM1d) & original description: none 0.07 OrthoFinder output from all 47 species
Ore_g28867 LDL3 histone demethylase *(KDM1d) & original description: none 0.08 OrthoFinder output from all 47 species
Pir_g11421 LDL3 histone demethylase *(KDM1d) & original description: none 0.04 OrthoFinder output from all 47 species
Pp3c1_1170V3.1 LDL3, Pp3c1_1170 LSD1-like 3 0.01 OrthoFinder output from all 47 species
Pp3c1_6380V3.1 LDL3, Pp3c1_6380 LSD1-like 3 0.01 OrthoFinder output from all 47 species
Ppi_g02424 LDL3 histone demethylase *(KDM1d) & original description: none 0.08 OrthoFinder output from all 47 species
Ppi_g14951 LDL3 histone demethylase *(KDM1d) & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g36106 No alias histone demethylase *(KDM1d) & original description: none 0.08 OrthoFinder output from all 47 species
Smo405878 LDL3 Chromatin organisation.histone modifications.histone... 0.1 OrthoFinder output from all 47 species
Solyc04g081100.3.1 LDL3, Solyc04g081100 lysine-specific demethylase (LDL3) 0.1 OrthoFinder output from all 47 species
Spa_g10310 LDL3 histone demethylase *(KDM1d) & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g26760 LDL3 histone demethylase *(KDM1d) & original description: none 0.09 OrthoFinder output from all 47 species
Zm00001e002184_P001 LDL3, Zm00001e002184 lysine-specific demethylase (LDL3) 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0016491 oxidoreductase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003724 RNA helicase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006368 transcription elongation by RNA polymerase II IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
CC GO:0008023 transcription elongation factor complex IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008186 ATP-dependent activity, acting on RNA IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016570 histone modification IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
CC GO:0016593 Cdc73/Paf1 complex IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
CC GO:0030684 preribosome IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR007526 SWIRM 319 395
IPR002937 Amino_oxidase 686 1135
No external refs found!