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  5. Dcu_g10046

Dcu_g10046


Description : snRNP-associated protein *(SR140) & original description: none


Gene families : OG0003274 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003274_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g10046

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00064p00173090 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
AT5G25060 No alias RNA recognition motif (RRM)-containing protein 0.03 OrthoFinder output from all 47 species
Adi_g011558 No alias snRNP-associated protein *(SR140) & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g059804 No alias snRNP-associated protein *(SR140) & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g02691 No alias snRNP-associated protein *(SR140) & original description: none 0.06 OrthoFinder output from all 47 species
Als_g01963 No alias snRNP-associated protein *(SR140) & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g42378 No alias snRNP-associated protein *(SR140) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g21519 No alias snRNP-associated protein *(SR140) & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene46186.t1 Aspi01Gene46186 snRNP-associated protein *(SR140) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0003.g008157 No alias snRNP-associated protein *(SR140) & original... 0.04 OrthoFinder output from all 47 species
Ceric.14G097400.1 Ceric.14G097400 snRNP-associated protein *(SR140) & original... 0.07 OrthoFinder output from all 47 species
Dac_g01031 No alias snRNP-associated protein *(SR140) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g09866 No alias snRNP-associated protein *(SR140) & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g29046 No alias snRNP-associated protein *(SR140) & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01035985001 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.09 OrthoFinder output from all 47 species
Gb_18824 No alias snRNP-associated protein (SR140) 0.05 OrthoFinder output from all 47 species
LOC_Os02g08360.1 LOC_Os02g08360 snRNP-associated protein (SR140) 0.03 OrthoFinder output from all 47 species
Lfl_g11150 No alias snRNP-associated protein *(SR140) & original description: none 0.09 OrthoFinder output from all 47 species
Mp6g17130.1 No alias snRNP-associated protein (SR140) 0.06 OrthoFinder output from all 47 species
Msp_g14289 No alias snRNP-associated protein *(SR140) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g09321 No alias snRNP-associated protein *(SR140) & original description: none 0.07 OrthoFinder output from all 47 species
Pir_g02308 No alias snRNP-associated protein *(SR140) & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g004998 No alias snRNP-associated protein *(SR140) & original... 0.04 OrthoFinder output from all 47 species
Sam_g08483 No alias snRNP-associated protein *(SR140) & original description: none 0.07 OrthoFinder output from all 47 species
Solyc03g025280.4.1 Solyc03g025280 snRNP-associated protein (SR140) 0.03 OrthoFinder output from all 47 species
Spa_g12506 No alias snRNP-associated protein *(SR140) & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g07962 No alias snRNP-associated protein *(SR140) & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e013828_P003 Zm00001e013828 snRNP-associated protein (SR140) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0006396 RNA processing IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004402 histone acetyltransferase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004525 ribonuclease III activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0006475 internal protein amino acid acetylation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016573 histone acetylation IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0018393 internal peptidyl-lysine acetylation IEP HCCA
BP GO:0018394 peptidyl-lysine acetylation IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0034212 peptide N-acetyltransferase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR006569 CID_dom 467 595
IPR000504 RRM_dom 200 272
IPR000061 Surp 347 399
No external refs found!