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  5. Dcu_g09594

Dcu_g09594


Description : pre-mRNA splicing factor *(SF1) & original description: none


Gene families : OG0000568 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000568_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g09594
Cluster HCCA: Cluster_57

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00180690 evm_27.TU.AmTr_v1... Splicing factor-like protein 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00078p00155240 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U2-type-intron-specific... 0.04 OrthoFinder output from all 47 species
AT3G32940 No alias RNA-binding KH domain-containing protein 0.05 OrthoFinder output from all 47 species
AT5G51300 No alias splicing factor-related 0.05 OrthoFinder output from all 47 species
Adi_g014374 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g078788 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g087207 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g03928 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g07951 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g13487 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.11 OrthoFinder output from all 47 species
Als_g15565 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g32042 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.06 OrthoFinder output from all 47 species
Als_g52145 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g07393 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g11258 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g01316 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g27472 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.01G107100.1 Ceric.01G107100 pre-mRNA splicing factor *(SF1) & original description:... 0.06 OrthoFinder output from all 47 species
Ceric.06G040400.1 Ceric.06G040400 pre-mRNA splicing factor *(SF1) & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.21G060800.1 Ceric.21G060800 pre-mRNA splicing factor *(SF1) & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.25G061400.1 Ceric.25G061400 pre-mRNA splicing factor *(SF1) & original description:... 0.07 OrthoFinder output from all 47 species
Ceric.28G060200.1 Ceric.28G060200 pre-mRNA splicing factor *(SF1) & original description:... 0.04 OrthoFinder output from all 47 species
Cre09.g386731 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.03 OrthoFinder output from all 47 species
Dac_g21025 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g16716 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g30248 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.05 OrthoFinder output from all 47 species
Gb_09287 No alias pre-mRNA splicing factor (SF1) 0.03 OrthoFinder output from all 47 species
Gb_19921 No alias pre-mRNA splicing factor (SF1) 0.04 OrthoFinder output from all 47 species
Gb_23987 No alias pre-mRNA splicing factor (SF1) 0.05 OrthoFinder output from all 47 species
Gb_41039 No alias pre-mRNA splicing factor (SF1) 0.03 OrthoFinder output from all 47 species
LOC_Os08g01070.2 LOC_Os08g01070 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Len_g10453 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g54499 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g04206 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g04920 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g29785 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.05 OrthoFinder output from all 47 species
MA_10426554g0020 No alias pre-mRNA splicing factor (SF1) 0.04 OrthoFinder output from all 47 species
MA_10432977g0010 No alias pre-mRNA splicing factor (SF1) 0.02 OrthoFinder output from all 47 species
MA_11962g0020 No alias pre-mRNA splicing factor (SF1) 0.03 OrthoFinder output from all 47 species
MA_15045g0010 No alias pre-mRNA splicing factor (SF1) 0.04 OrthoFinder output from all 47 species
MA_160895g0010 No alias pre-mRNA splicing factor (SF1) 0.04 OrthoFinder output from all 47 species
MA_4029g0020 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_8555g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp7g15050.1 No alias pre-mRNA splicing factor (SF1) 0.03 OrthoFinder output from all 47 species
Msp_g15293 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g15402 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g25454 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g29020 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g04834 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g06586 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g08596 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g16656 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g20482 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g31502 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Ore_g40492 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g15689 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g18388 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g60982 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g11449 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g04689 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g001254 No alias pre-mRNA splicing factor *(SF1) & original description:... 0.03 OrthoFinder output from all 47 species
Sam_g09720 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g18592 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.06 OrthoFinder output from all 47 species
Sam_g18658 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g27159 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.07 OrthoFinder output from all 47 species
Smo73732 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
Solyc01g006010.3.1 Solyc01g006010 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Spa_g17324 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g25982 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g54052 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g09957 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g11604 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g45333 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e008383_P001 Zm00001e008383 pre-mRNA splicing factor (SF1) 0.04 OrthoFinder output from all 47 species
Zm00001e040741_P001 Zm00001e040741 pre-mRNA splicing factor (SF1) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 216 286
IPR032570 SF1-HH 81 197
No external refs found!