Aliases : PRCGB, PBD1
Description : beta-type-4 component *(PBD) of 26S proteasome & original description: none
Gene families : OG0004283 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004283_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Dcu_g08528 | |
Cluster | HCCA: Cluster_4 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00002p00272080 | PRCGB, PBD1,... | Protein degradation.26S proteasome.20S core... | 0.04 | OrthoFinder output from all 47 species | |
AT4G14800 | PBD2 | 20S proteasome beta subunit D2 | 0.06 | OrthoFinder output from all 47 species | |
Adi_g008050 | PRCGB, PBD1 | beta-type-4 component *(PBD) of 26S proteasome &... | 0.06 | OrthoFinder output from all 47 species | |
Aev_g00486 | PRCGB, PBD1 | beta-type-4 component *(PBD) of 26S proteasome &... | 0.03 | OrthoFinder output from all 47 species | |
Aob_g17132 | PRCGB, PBD1 | beta-type-4 component *(PBD) of 26S proteasome &... | 0.04 | OrthoFinder output from all 47 species | |
Aop_g00205 | PRCGB, PBD1 | beta-type-4 component *(PBD) of 26S proteasome &... | 0.03 | OrthoFinder output from all 47 species | |
Cba_g00483 | PRCGB, PBD1 | beta-type-4 component *(PBD) of 26S proteasome &... | 0.03 | OrthoFinder output from all 47 species | |
Ceric.27G023100.1 | PRCGB, PBD1,... | beta-type-4 component *(PBD) of 26S proteasome &... | 0.07 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00020554.80 | PRCGB, PBD1 | Protein degradation.26S proteasome.20S core... | 0.02 | OrthoFinder output from all 47 species | |
Cre14.g610950 | PRCGB, PBD1 | Protein degradation.26S proteasome.20S core... | 0.06 | OrthoFinder output from all 47 species | |
Dac_g04914 | PRCGB, PBD1 | beta-type-4 component *(PBD) of 26S proteasome &... | 0.03 | OrthoFinder output from all 47 species | |
Dde_g00381 | PRCGB, PBD1 | beta-type-4 component *(PBD) of 26S proteasome &... | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01001182001 | PRCGB, PBD1 | Protein degradation.26S proteasome.20S core... | 0.07 | OrthoFinder output from all 47 species | |
Gb_19480 | PRCGB, PBD1 | Proteasome subunit beta type-2-A OS=Arabidopsis thaliana... | 0.03 | OrthoFinder output from all 47 species | |
Gb_19481 | PRCGB, PBD1 | Proteasome subunit beta type-2-A OS=Arabidopsis thaliana... | 0.04 | OrthoFinder output from all 47 species | |
LOC_Os03g48930.1 | PRCGB, PBD1,... | component beta type-4 of 26S proteasome | 0.06 | OrthoFinder output from all 47 species | |
Lfl_g04464 | PRCGB, PBD1 | beta-type-4 component *(PBD) of 26S proteasome &... | 0.03 | OrthoFinder output from all 47 species | |
MA_119122g0010 | PBD2 | Proteasome subunit beta type-2-B OS=Arabidopsis thaliana... | 0.04 | OrthoFinder output from all 47 species | |
MA_20372g0010 | PBD2 | Proteasome subunit beta type-2 OS=Oryza sativa subsp.... | 0.02 | OrthoFinder output from all 47 species | |
Mp4g04320.1 | PRCGB, PBD1 | component beta type-4 of 26S proteasome | 0.07 | OrthoFinder output from all 47 species | |
Msp_g00339 | PRCGB, PBD1 | beta-type-4 component *(PBD) of 26S proteasome &... | 0.07 | OrthoFinder output from all 47 species | |
Ore_g05376 | PRCGB, PBD1 | beta-type-4 component *(PBD) of 26S proteasome &... | 0.02 | OrthoFinder output from all 47 species | |
Pir_g65663 | PRCGB, PBD1 | beta-type-4 component *(PBD) of 26S proteasome &... | 0.05 | OrthoFinder output from all 47 species | |
Pp3c20_18180V3.1 | PRCGB, PBD1, Pp3c20_18180 | 20S proteasome beta subunit D1 | 0.07 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0132.g022151 | PRCGB, PBD1 | beta-type-4 component *(PBD) of 26S proteasome &... | 0.05 | OrthoFinder output from all 47 species | |
Sam_g09970 | No alias | beta-type-4 component *(PBD) of 26S proteasome &... | 0.03 | OrthoFinder output from all 47 species | |
Solyc09g082320.3.1 | PRCGB, PBD1,... | component beta type-4 of 26S proteasome | 0.07 | OrthoFinder output from all 47 species | |
Spa_g25247 | PRCGB, PBD1 | beta-type-4 component *(PBD) of 26S proteasome &... | 0.05 | OrthoFinder output from all 47 species | |
Spa_g46825 | PRCGB, PBD1 | beta-type-4 component *(PBD) of 26S proteasome &... | 0.05 | OrthoFinder output from all 47 species | |
Tin_g04912 | PRCGB, PBD1 | beta-type-4 component *(PBD) of 26S proteasome &... | 0.04 | OrthoFinder output from all 47 species | |
Zm00001e005337_P001 | PRCGB, PBD1,... | component beta type-4 of 26S proteasome | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e012245_P001 | PRCGB, PBD1,... | component beta type-4 of 26S proteasome | 0.03 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0005839 | proteasome core complex | IEA | Interproscan |
BP | GO:0051603 | proteolysis involved in protein catabolic process | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0002161 | aminoacyl-tRNA editing activity | IEP | HCCA |
MF | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | IEP | HCCA |
MF | GO:0004175 | endopeptidase activity | IEP | HCCA |
MF | GO:0004252 | serine-type endopeptidase activity | IEP | HCCA |
CC | GO:0005737 | cytoplasm | IEP | HCCA |
CC | GO:0005750 | mitochondrial respiratory chain complex III | IEP | HCCA |
BP | GO:0006091 | generation of precursor metabolites and energy | IEP | HCCA |
BP | GO:0006122 | mitochondrial electron transport, ubiquinol to cytochrome c | IEP | HCCA |
BP | GO:0006511 | ubiquitin-dependent protein catabolic process | IEP | HCCA |
BP | GO:0006605 | protein targeting | IEP | HCCA |
BP | GO:0006612 | protein targeting to membrane | IEP | HCCA |
BP | GO:0006613 | cotranslational protein targeting to membrane | IEP | HCCA |
BP | GO:0006614 | SRP-dependent cotranslational protein targeting to membrane | IEP | HCCA |
BP | GO:0006766 | vitamin metabolic process | IEP | HCCA |
BP | GO:0006767 | water-soluble vitamin metabolic process | IEP | HCCA |
BP | GO:0006771 | riboflavin metabolic process | IEP | HCCA |
BP | GO:0006886 | intracellular protein transport | IEP | HCCA |
BP | GO:0008104 | protein localization | IEP | HCCA |
MF | GO:0008236 | serine-type peptidase activity | IEP | HCCA |
MF | GO:0008312 | 7S RNA binding | IEP | HCCA |
BP | GO:0009057 | macromolecule catabolic process | IEP | HCCA |
BP | GO:0009060 | aerobic respiration | IEP | HCCA |
BP | GO:0009110 | vitamin biosynthetic process | IEP | HCCA |
BP | GO:0009231 | riboflavin biosynthetic process | IEP | HCCA |
CC | GO:0009349 | riboflavin synthase complex | IEP | HCCA |
BP | GO:0009987 | cellular process | IEP | HCCA |
BP | GO:0015031 | protein transport | IEP | HCCA |
BP | GO:0015980 | energy derivation by oxidation of organic compounds | IEP | HCCA |
MF | GO:0016859 | cis-trans isomerase activity | IEP | HCCA |
MF | GO:0017171 | serine hydrolase activity | IEP | HCCA |
BP | GO:0019646 | aerobic electron transport chain | IEP | HCCA |
CC | GO:0019773 | proteasome core complex, alpha-subunit complex | IEP | HCCA |
BP | GO:0019941 | modification-dependent protein catabolic process | IEP | HCCA |
BP | GO:0022607 | cellular component assembly | IEP | HCCA |
BP | GO:0022900 | electron transport chain | IEP | HCCA |
BP | GO:0022904 | respiratory electron transport chain | IEP | HCCA |
BP | GO:0033036 | macromolecule localization | IEP | HCCA |
BP | GO:0033365 | protein localization to organelle | IEP | HCCA |
BP | GO:0042364 | water-soluble vitamin biosynthetic process | IEP | HCCA |
BP | GO:0042726 | flavin-containing compound metabolic process | IEP | HCCA |
BP | GO:0042727 | flavin-containing compound biosynthetic process | IEP | HCCA |
BP | GO:0043248 | proteasome assembly | IEP | HCCA |
BP | GO:0043632 | modification-dependent macromolecule catabolic process | IEP | HCCA |
BP | GO:0043933 | protein-containing complex organization | IEP | HCCA |
BP | GO:0044248 | cellular catabolic process | IEP | HCCA |
BP | GO:0044265 | cellular macromolecule catabolic process | IEP | HCCA |
BP | GO:0044283 | small molecule biosynthetic process | IEP | HCCA |
BP | GO:0045047 | protein targeting to ER | IEP | HCCA |
BP | GO:0045184 | establishment of protein localization | IEP | HCCA |
CC | GO:0045275 | respiratory chain complex III | IEP | HCCA |
BP | GO:0045333 | cellular respiration | IEP | HCCA |
BP | GO:0046907 | intracellular transport | IEP | HCCA |
CC | GO:0048500 | signal recognition particle | IEP | HCCA |
MF | GO:0051499 | D-aminoacyl-tRNA deacylase activity | IEP | HCCA |
BP | GO:0051649 | establishment of localization in cell | IEP | HCCA |
BP | GO:0051668 | localization within membrane | IEP | HCCA |
MF | GO:0052689 | carboxylic ester hydrolase activity | IEP | HCCA |
BP | GO:0065003 | protein-containing complex assembly | IEP | HCCA |
CC | GO:0070069 | cytochrome complex | IEP | HCCA |
BP | GO:0070727 | cellular macromolecule localization | IEP | HCCA |
BP | GO:0070972 | protein localization to endoplasmic reticulum | IEP | HCCA |
BP | GO:0071705 | nitrogen compound transport | IEP | HCCA |
BP | GO:0072594 | establishment of protein localization to organelle | IEP | HCCA |
BP | GO:0072599 | establishment of protein localization to endoplasmic reticulum | IEP | HCCA |
BP | GO:0072657 | protein localization to membrane | IEP | HCCA |
BP | GO:0090150 | establishment of protein localization to membrane | IEP | HCCA |
CC | GO:0098798 | mitochondrial protein-containing complex | IEP | HCCA |
CC | GO:0098800 | inner mitochondrial membrane protein complex | IEP | HCCA |
CC | GO:0098803 | respiratory chain complex | IEP | HCCA |
MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | HCCA |
CC | GO:1902495 | transmembrane transporter complex | IEP | HCCA |
CC | GO:1990204 | oxidoreductase complex | IEP | HCCA |
CC | GO:1990234 | transferase complex | IEP | HCCA |
CC | GO:1990351 | transporter complex | IEP | HCCA |
CC | GO:1990904 | ribonucleoprotein complex | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR001353 | Proteasome_sua/b | 4 | 182 |
No external refs found! |