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  5. Dcu_g07178

Dcu_g07178


Description : component *(FES1) of FRI-C transcription effector complex & original description: none


Gene families : OG0000859 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000859_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g07178
Cluster HCCA: Cluster_57

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00071p00110320 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C3H zinc... 0.02 OrthoFinder output from all 47 species
AMTR_s00154p00086540 evm_27.TU.AmTr_v1... Zinc finger CCCH domain-containing protein 38... 0.04 OrthoFinder output from all 47 species
AMTR_s00154p00087040 evm_27.TU.AmTr_v1... No description available 0.07 OrthoFinder output from all 47 species
AT3G18640 No alias Zinc finger C-x8-C-x5-C-x3-H type family protein 0.08 OrthoFinder output from all 47 species
Adi_g020080 No alias component *(FES1) of FRI-C transcription effector... 0.09 OrthoFinder output from all 47 species
Adi_g051624 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g051625 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g086845 No alias component *(FES1) of FRI-C transcription effector... 0.1 OrthoFinder output from all 47 species
Ala_g14556 No alias component *(FES1) of FRI-C transcription effector... 0.11 OrthoFinder output from all 47 species
Ala_g33431 No alias component *(FES1) of FRI-C transcription effector... 0.07 OrthoFinder output from all 47 species
Ala_g38718 No alias component *(FES1) of FRI-C transcription effector... 0.05 OrthoFinder output from all 47 species
Als_g05138 No alias component *(FES1) of FRI-C transcription effector... 0.08 OrthoFinder output from all 47 species
Als_g12402 No alias component *(FES1) of FRI-C transcription effector... 0.02 OrthoFinder output from all 47 species
Als_g21455 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g27332 No alias component *(FES1) of FRI-C transcription effector... 0.04 OrthoFinder output from all 47 species
Als_g32464 No alias component *(FES1) of FRI-C transcription effector... 0.05 OrthoFinder output from all 47 species
Aob_g22679 No alias component *(FES1) of FRI-C transcription effector... 0.08 OrthoFinder output from all 47 species
Aob_g28684 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g31626 No alias component *(FES1) of FRI-C transcription effector... 0.09 OrthoFinder output from all 47 species
Aspi01Gene00676.t1 Aspi01Gene00676 component *(FES1) of FRI-C transcription effector... 0.04 OrthoFinder output from all 47 species
Cba_g23169 No alias component *(FES1) of FRI-C transcription effector... 0.03 OrthoFinder output from all 47 species
Ceric.09G003600.1 Ceric.09G003600 component *(FES1) of FRI-C transcription effector... 0.09 OrthoFinder output from all 47 species
Ceric.20G066500.1 Ceric.20G066500 component *(FES1) of FRI-C transcription effector... 0.14 OrthoFinder output from all 47 species
Ceric.20G084000.1 Ceric.20G084000 component *(FES1) of FRI-C transcription effector... 0.11 OrthoFinder output from all 47 species
Ceric.29G050700.1 Ceric.29G050700 component *(FES1) of FRI-C transcription effector... 0.09 OrthoFinder output from all 47 species
Cre01.g003450 No alias No description available 0.04 OrthoFinder output from all 47 species
Dac_g06929 No alias component *(FES1) of FRI-C transcription effector... 0.04 OrthoFinder output from all 47 species
Dde_g02390 No alias component *(FES1) of FRI-C transcription effector... 0.03 OrthoFinder output from all 47 species
Dde_g02406 No alias component *(FES1) of FRI-C transcription effector... 0.04 OrthoFinder output from all 47 species
Dde_g10766 No alias component *(FES1) of FRI-C transcription effector... 0.03 OrthoFinder output from all 47 species
Ehy_g16622 No alias component *(FES1) of FRI-C transcription effector... 0.03 OrthoFinder output from all 47 species
Ehy_g18865 No alias component *(FES1) of FRI-C transcription effector... 0.08 OrthoFinder output from all 47 species
Ehy_g26937 No alias component *(FES1) of FRI-C transcription effector... 0.06 OrthoFinder output from all 47 species
GSVIVT01008114001 No alias Zinc finger CCCH domain-containing protein 38... 0.03 OrthoFinder output from all 47 species
GSVIVT01010035001 ACCD RNA biosynthesis.transcriptional activation.C3H zinc... 0.09 OrthoFinder output from all 47 species
Gb_00875 No alias C3H zinc finger transcription factor 0.06 OrthoFinder output from all 47 species
Gb_19122 No alias C3H zinc finger transcription factor 0.1 OrthoFinder output from all 47 species
Gb_26302 No alias C3H zinc finger transcription factor 0.05 OrthoFinder output from all 47 species
LOC_Os05g41790.1 LOC_Os05g41790 C3H zinc finger transcription factor 0.05 OrthoFinder output from all 47 species
LOC_Os08g04170.1 LOC_Os08g04170 C3H zinc finger transcription factor 0.09 OrthoFinder output from all 47 species
Len_g20647 No alias component *(FES1) of FRI-C transcription effector... 0.06 OrthoFinder output from all 47 species
Len_g22996 No alias component *(FES1) of FRI-C transcription effector... 0.04 OrthoFinder output from all 47 species
Len_g31683 No alias component *(FES1) of FRI-C transcription effector... 0.04 OrthoFinder output from all 47 species
Lfl_g05738 No alias component *(FES1) of FRI-C transcription effector... 0.07 OrthoFinder output from all 47 species
Lfl_g29094 No alias component *(FES1) of FRI-C transcription effector... 0.06 OrthoFinder output from all 47 species
MA_10435667g0020 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_111475g0010 No alias Zinc finger CCCH domain-containing protein 55 OS=Oryza... 0.05 OrthoFinder output from all 47 species
MA_111475g0020 No alias no hits & (original description: none) 0.11 OrthoFinder output from all 47 species
MA_321233g0010 No alias no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
MA_8408g0030 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Mp1g05400.1 No alias Zinc finger CCCH domain-containing protein 55 OS=Oryza... 0.06 OrthoFinder output from all 47 species
Msp_g15688 No alias component *(FES1) of FRI-C transcription effector... 0.03 OrthoFinder output from all 47 species
Msp_g19470 No alias component *(FES1) of FRI-C transcription effector... 0.07 OrthoFinder output from all 47 species
Nbi_g04479 No alias component *(FES1) of FRI-C transcription effector... 0.07 OrthoFinder output from all 47 species
Nbi_g33981 No alias component *(FES1) of FRI-C transcription effector... 0.03 OrthoFinder output from all 47 species
Ore_g08246 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Ore_g25353 No alias component *(FES1) of FRI-C transcription effector... 0.02 OrthoFinder output from all 47 species
Ore_g30501 No alias component *(FES1) of FRI-C transcription effector... 0.09 OrthoFinder output from all 47 species
Ore_g37073 No alias component *(FES1) of FRI-C transcription effector... 0.04 OrthoFinder output from all 47 species
Ore_g44437 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pir_g18853 No alias component *(FES1) of FRI-C transcription effector... 0.04 OrthoFinder output from all 47 species
Pir_g19528 No alias component *(FES1) of FRI-C transcription effector... 0.05 OrthoFinder output from all 47 species
Pir_g41479 No alias component *(FES1) of FRI-C transcription effector... 0.05 OrthoFinder output from all 47 species
Pir_g61674 No alias component *(FES1) of FRI-C transcription effector... 0.02 OrthoFinder output from all 47 species
Pnu_g00004 No alias component *(FES1) of FRI-C transcription effector... 0.02 OrthoFinder output from all 47 species
Ppi_g08786 No alias component *(FES1) of FRI-C transcription effector... 0.04 OrthoFinder output from all 47 species
Ppi_g11003 No alias component *(FES1) of FRI-C transcription effector... 0.07 OrthoFinder output from all 47 species
Ppi_g43758 No alias component *(FES1) of FRI-C transcription effector... 0.05 OrthoFinder output from all 47 species
Smo439131 No alias No description available 0.05 OrthoFinder output from all 47 species
Solyc03g006350.3.1 FES1, Solyc03g006350 C3H zinc finger transcription factor 0.07 OrthoFinder output from all 47 species
Solyc04g064800.4.1 Solyc04g064800 C3H zinc finger transcription factor 0.04 OrthoFinder output from all 47 species
Solyc06g069440.3.1 Solyc06g069440 Zinc finger CCCH domain-containing protein 38... 0.06 OrthoFinder output from all 47 species
Spa_g08435 No alias component *(FES1) of FRI-C transcription effector... 0.06 OrthoFinder output from all 47 species
Spa_g17866 No alias component *(FES1) of FRI-C transcription effector... 0.02 OrthoFinder output from all 47 species
Spa_g19280 No alias component *(FES1) of FRI-C transcription effector... 0.05 OrthoFinder output from all 47 species
Spa_g41981 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g53143 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g10851 No alias component *(FES1) of FRI-C transcription effector... 0.09 OrthoFinder output from all 47 species
Tin_g20286 No alias component *(FES1) of FRI-C transcription effector... 0.08 OrthoFinder output from all 47 species
Tin_g26553 No alias component *(FES1) of FRI-C transcription effector... 0.05 OrthoFinder output from all 47 species
Zm00001e000843_P002 Zm00001e000843 Zinc finger CCCH domain-containing protein 55 OS=Oryza... 0.06 OrthoFinder output from all 47 species
Zm00001e040314_P001 Zm00001e040314 C3H zinc finger transcription factor 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0006396 RNA processing IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR000061 Surp 354 404
IPR000061 Surp 142 195
No external refs found!