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  5. Dcu_g05612

Dcu_g05612


Description : RNA editing factor *(PDM2) & original description: none


Gene families : OG0007769 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007769_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g05612

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00136p00085920 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g10910,... 0.05 OrthoFinder output from all 47 species
Adi_g083413 No alias RNA editing factor *(PDM2) & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g25084 No alias RNA editing factor *(PDM2) & original description: none 0.05 OrthoFinder output from all 47 species
Als_g24122 No alias RNA editing factor *(PDM2) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g13080 No alias RNA editing factor *(PDM2) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01022920001 No alias Pentatricopeptide repeat-containing protein At1g10910,... 0.03 OrthoFinder output from all 47 species
LOC_Os01g37870.4 LOC_Os01g37870 Pentatricopeptide repeat-containing protein At1g10910,... 0.04 OrthoFinder output from all 47 species
Len_g08793 No alias RNA editing factor *(PDM2) & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g15917 No alias RNA editing factor *(PDM2) & original description: none 0.04 OrthoFinder output from all 47 species
MA_10436335g0010 No alias Pentatricopeptide repeat-containing protein At1g10910,... 0.03 OrthoFinder output from all 47 species
MA_316275g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_92401g0010 No alias Pentatricopeptide repeat-containing protein At1g10910,... 0.03 OrthoFinder output from all 47 species
Nbi_g08999 No alias RNA editing factor *(PDM2) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0141.g022758 No alias RNA editing factor *(PDM2) & original description: CDS=659-2260 0.05 OrthoFinder output from all 47 species
Sam_g27754 No alias RNA editing factor *(PDM2) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc11g040260.2.1 Solyc11g040260 Pentatricopeptide repeat-containing protein At1g10910,... 0.04 OrthoFinder output from all 47 species
Zm00001e020710_P002 Zm00001e020710 Pentatricopeptide repeat-containing protein At1g10910,... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 156 181
IPR033443 PPR_long 283 431
IPR033443 PPR_long 450 576
IPR002885 Pentatricopeptide_repeat 187 236
No external refs found!