Dcu_g03223 (CCT, CRP)

Aliases : CCT, CRP

Description : component *(MED12) of kinase module of MEDIATOR transcription co-activator complex & original description: none

Gene families : OG0004414 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004414_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Dcu_g03223
Cluster	HCCA: Cluster_57

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00009p00238900	CCT, CRP,...	RNA biosynthesis.RNA polymerase II-dependent...	0.06	OrthoFinder output from all 47 species
AT4G00450	CCT, CRP	RNA polymerase II transcription mediators	0.1	OrthoFinder output from all 47 species
Adi_g017173	CCT, CRP	component *(MED12) of kinase module of MEDIATOR...	0.09	OrthoFinder output from all 47 species
Ala_g15248	CCT, CRP	component *(MED12) of kinase module of MEDIATOR...	0.11	OrthoFinder output from all 47 species
Als_g57712	CCT, CRP	component *(MED12) of kinase module of MEDIATOR...	0.03	OrthoFinder output from all 47 species
Aob_g42383	CCT, CRP	component *(MED12) of kinase module of MEDIATOR...	0.13	OrthoFinder output from all 47 species
Aop_g05248	CCT, CRP	component *(MED12) of kinase module of MEDIATOR...	0.04	OrthoFinder output from all 47 species
Aspi01Gene23675.t1	CCT, CRP, Aspi01Gene23675	component *(MED12) of kinase module of MEDIATOR...	0.03	OrthoFinder output from all 47 species
Azfi_s0384.g067466	CCT, CRP	component *(MED12) of kinase module of MEDIATOR...	0.05	OrthoFinder output from all 47 species
Cba_g37907	CCT, CRP	component *(MED12) of kinase module of MEDIATOR...	0.07	OrthoFinder output from all 47 species
Ceric.1Z299100.1	CCT, CRP, Ceric.1Z299100	component *(MED12) of kinase module of MEDIATOR...	0.08	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000042.125	CCT, CRP	Mediator of RNA polymerase II transcription subunit 12...	0.01	OrthoFinder output from all 47 species
Dac_g12893	CCT, CRP	component *(MED12) of kinase module of MEDIATOR...	0.04	OrthoFinder output from all 47 species
GSVIVT01026933001	CCT, CRP	RNA biosynthesis.RNA polymerase II-dependent...	0.1	OrthoFinder output from all 47 species
Gb_27746	CCT, CRP	Mediator of RNA polymerase II transcription subunit 12...	0.04	OrthoFinder output from all 47 species
LOC_Os07g45400.1	CCT, CRP, LOC_Os07g45400	component MED12 of kinase module of MEDIATOR...	0.06	OrthoFinder output from all 47 species
Len_g14809	CCT, CRP	component *(MED12) of kinase module of MEDIATOR...	0.07	OrthoFinder output from all 47 species
Lfl_g36084	CCT, CRP	component *(MED12) of kinase module of MEDIATOR...	0.11	OrthoFinder output from all 47 species
MA_10435144g0010	CCT, CRP	component MED12 of kinase module of MEDIATOR...	0.13	OrthoFinder output from all 47 species
MA_65214g0010	CCT, CRP	Mediator of RNA polymerase II transcription subunit 12...	0.04	OrthoFinder output from all 47 species
Msp_g14815	CCT, CRP	component *(MED12) of kinase module of MEDIATOR...	0.07	OrthoFinder output from all 47 species
Nbi_g05492	CCT, CRP	component *(MED12) of kinase module of MEDIATOR...	0.03	OrthoFinder output from all 47 species
Ore_g04835	CCT, CRP	component *(MED12) of kinase module of MEDIATOR...	0.04	OrthoFinder output from all 47 species
Pnu_g12212	CCT, CRP	component *(MED12) of kinase module of MEDIATOR...	0.03	OrthoFinder output from all 47 species
Ppi_g03293	CCT, CRP	component *(MED12) of kinase module of MEDIATOR...	0.08	OrthoFinder output from all 47 species
Sacu_v1.1_s0042.g012782	CCT, CRP	component *(MED12) of kinase module of MEDIATOR...	0.03	OrthoFinder output from all 47 species
Sam_g50410	No alias	component *(MED12) of kinase module of MEDIATOR...	0.12	OrthoFinder output from all 47 species
Smo441953	CCT, CRP	RNA biosynthesis.RNA polymerase II-dependent...	0.08	OrthoFinder output from all 47 species
Solyc01g094620.3.1	CCT, CRP, Solyc01g094620	component MED12 of kinase module of MEDIATOR...	0.12	OrthoFinder output from all 47 species
Spa_g09455	CCT, CRP	component *(MED12) of kinase module of MEDIATOR...	0.11	OrthoFinder output from all 47 species
Tin_g09812	CCT, CRP	component *(MED12) of kinase module of MEDIATOR...	0.09	OrthoFinder output from all 47 species
Zm00001e000051_P004	CCT, CRP, Zm00001e000051	component MED12 of kinase module of MEDIATOR...	0.07	OrthoFinder output from all 47 species
Zm00001e039106_P001	CCT, CRP, Zm00001e039106	component MED12 of kinase module of MEDIATOR...	0.07	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003712	transcription coregulator activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	None	Extended
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
CC	GO:0016592	mediator complex	IEA	Interproscan
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	HCCA
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	HCCA
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0006413	translational initiation	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
BP	GO:0008380	RNA splicing	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR019035	Mediator_Med12	160	220

External Links

No external refs found!

Dcu_g03223 (CCT, CRP)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation