Dcu_g02781

Description : proline-tRNA ligase & original description: none

Gene families : OG0001971 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001971_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Dcu_g02781

Target	Alias	Description	ECC score	Gene Family Method
AT3G62120	No alias	Class II aaRS and biotin synthetases superfamily protein	0.04	OrthoFinder output from all 47 species
Aev_g05302	No alias	proline-tRNA ligase & original description: none	0.06	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021463.3	OVA6, PRORS1	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.02	OrthoFinder output from all 47 species
Dac_g15024	No alias	proline-tRNA ligase & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g00716	No alias	proline-tRNA ligase & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01028250001	No alias	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.02	OrthoFinder output from all 47 species
LOC_Os12g25710.1	LOC_Os12g25710	proline-tRNA ligase	0.03	OrthoFinder output from all 47 species
Mp2g25470.1	No alias	proline-tRNA ligase	0.02	OrthoFinder output from all 47 species
Ore_g06498	No alias	proline-tRNA ligase & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g01128	No alias	proline-tRNA ligase & original description: none	0.04	OrthoFinder output from all 47 species
Sam_g11315	No alias	proline-tRNA ligase & original description: none	0.04	OrthoFinder output from all 47 species
Smo74713	No alias	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.03	OrthoFinder output from all 47 species
Solyc06g068320.3.1	Solyc06g068320	proline-tRNA ligase	0.06	OrthoFinder output from all 47 species
Spa_g09904	No alias	proline-tRNA ligase & original description: none	0.04	OrthoFinder output from all 47 species
Tin_g15505	No alias	proline-tRNA ligase & original description: none	0.05	OrthoFinder output from all 47 species
Zm00001e024670_P003	Zm00001e024670	proline-tRNA ligase	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004812	aminoacyl-tRNA ligase activity	None	Extended
MF	GO:0004827	proline-tRNA ligase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	IEA	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006418	tRNA aminoacylation for protein translation	None	Extended
BP	GO:0006433	prolyl-tRNA aminoacylation	IEA	Interproscan
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043038	amino acid activation	None	Extended
BP	GO:0043039	tRNA aminoacylation	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140101	catalytic activity, acting on a tRNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000287	magnesium ion binding	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
BP	GO:0006352	DNA-templated transcription initiation	IEP	HCCA
BP	GO:0006432	phenylalanyl-tRNA aminoacylation	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0007030	Golgi organization	IEP	HCCA
CC	GO:0008303	caspase complex	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
BP	GO:0016255	attachment of GPI anchor to protein	IEP	HCCA
MF	GO:0016887	ATP hydrolysis activity	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
CC	GO:0042765	GPI-anchor transamidase complex	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA
CC	GO:0140534	endoplasmic reticulum protein-containing complex	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA
CC	GO:1905368	peptidase complex	IEP	HCCA
CC	GO:1905369	endopeptidase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004154	Anticodon-bd	337	427
IPR002314	aa-tRNA-synt_IIb	152	318
IPR016061	Pro-tRNA_ligase_II_C	460	533

External Links

No external refs found!

Dcu_g02781

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation