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  5. Dcu_g01831

Dcu_g01831 (APUM24, PUM24)


Aliases : APUM24, PUM24

Description : rRNA processing factor involved in ITS2 rRNA removal *(APUM24) & original description: none


Gene families : OG0004290 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004290_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g01831
Cluster HCCA: Cluster_57

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00139120 APUM24, PUM24,... Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
AT3G16810 APUM24, PUM24 pumilio 24 0.07 OrthoFinder output from all 47 species
Aev_g13951 APUM24, PUM24 rRNA processing factor involved in ITS2 rRNA removal... 0.02 OrthoFinder output from all 47 species
Als_g33028 APUM24, PUM24 rRNA processing factor involved in ITS2 rRNA removal... 0.05 OrthoFinder output from all 47 species
Aop_g00729 APUM24, PUM24 rRNA processing factor involved in ITS2 rRNA removal... 0.05 OrthoFinder output from all 47 species
Azfi_s0444.g070601 APUM24, PUM24 rRNA processing factor involved in ITS2 rRNA removal... 0.04 OrthoFinder output from all 47 species
Ceric.08G042900.1 APUM24, PUM24,... rRNA processing factor involved in ITS2 rRNA removal... 0.09 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000615.61 APUM24, PUM24 Protein biosynthesis.cytosolic ribosome.large subunit... 0.04 OrthoFinder output from all 47 species
Cre12.g528950 APUM24, PUM24 Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 OrthoFinder output from all 47 species
Dde_g11995 APUM24, PUM24 rRNA processing factor involved in ITS2 rRNA removal... 0.03 OrthoFinder output from all 47 species
LOC_Os03g61560.1 APUM24, PUM24,... APUM24 rRNA processing factor involved in ITS2 rRNA removal 0.03 OrthoFinder output from all 47 species
Lfl_g18003 APUM24, PUM24 rRNA processing factor involved in ITS2 rRNA removal... 0.05 OrthoFinder output from all 47 species
MA_10137141g0010 APUM24, PUM24 Pumilio homolog 24 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_9586059g0010 APUM24, PUM24 Pumilio homolog 24 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Mp7g01710.1 APUM24, PUM24 APUM24 rRNA processing factor involved in ITS2 rRNA removal 0.04 OrthoFinder output from all 47 species
Pir_g12537 APUM24, PUM24 rRNA processing factor involved in ITS2 rRNA removal... 0.03 OrthoFinder output from all 47 species
Ppi_g09487 APUM24, PUM24 rRNA processing factor involved in ITS2 rRNA removal... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0195.g025480 APUM24, PUM24 rRNA processing factor involved in ITS2 rRNA removal... 0.03 OrthoFinder output from all 47 species
Sam_g11002 No alias rRNA processing factor involved in ITS2 rRNA removal... 0.03 OrthoFinder output from all 47 species
Sam_g40242 No alias rRNA processing factor involved in ITS2 rRNA removal... 0.06 OrthoFinder output from all 47 species
Solyc01g065580.4.1 APUM24, PUM24,... APUM24 rRNA processing factor involved in ITS2 rRNA removal 0.09 OrthoFinder output from all 47 species
Zm00001e006271_P002 APUM24, PUM24,... APUM24 rRNA processing factor involved in ITS2 rRNA removal 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005685 U1 snRNP IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006376 mRNA splice site selection IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 174 196
IPR001313 Pumilio_RNA-bd_rpt 235 267
IPR001313 Pumilio_RNA-bd_rpt 387 406
IPR012959 CPL_dom 491 597
No external refs found!