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  5. Spa_g56625

Spa_g56625


Description : Met-tRNA positioning component *(eIF5B) of initiator tRNA carrier complex & original description: none


Gene families : OG0003112 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003112_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g56625

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00247p00011460 evm_27.TU.AmTr_v1... Protein biosynthesis.translation initiation.eIF5B... 0.02 OrthoFinder output from all 47 species
AMTR_s02879p00004340 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
Aob_g07436 No alias Met-tRNA positioning component *(eIF5B) of initiator... 0.02 OrthoFinder output from all 47 species
GSVIVT01034895001 No alias Protein biosynthesis.translation initiation.eIF5B... 0.03 OrthoFinder output from all 47 species
LOC_Os05g51500.1 LOC_Os05g51500 Met-tRNA positioning component eIF5B of initiator tRNA... 0.02 OrthoFinder output from all 47 species
Msp_g13519 No alias Met-tRNA positioning component *(eIF5B) of initiator... 0.03 OrthoFinder output from all 47 species
Pir_g37687 No alias Met-tRNA positioning component *(eIF5B) of initiator... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0035.g011357 No alias Met-tRNA positioning component *(eIF5B) of initiator... 0.02 OrthoFinder output from all 47 species
Solyc03g058350.4.1 Solyc03g058350 Met-tRNA positioning component eIF5B of initiator tRNA... 0.03 OrthoFinder output from all 47 species
Solyc03g058390.2.1 Solyc03g058390 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e026670_P001 Zm00001e026670 Met-tRNA positioning component eIF5B of initiator tRNA... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006366 transcription by RNA polymerase II IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0031369 translation initiation factor binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000795 T_Tr_GTP-bd_dom 900 1107
IPR004161 EFTu-like_2 1135 1211
IPR023115 TIF_IF2_dom3 1226 1337
No external refs found!