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  5. Spa_g54612

Spa_g54612


Description : not classified & original description: none


Gene families : OG0005770 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005770_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g54612

Target Alias Description ECC score Gene Family Method Actions
Aev_g13991 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.37G065800.1 Ceric.37G065800 not classified & original description: pacid=50615955... 0.03 OrthoFinder output from all 47 species
Dcu_g10841 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_129261g0030 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_20031g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Tin_g05247 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0001181 RNA polymerase I general transcription initiation factor activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006361 transcription initiation at RNA polymerase I promoter IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0140223 general transcription initiation factor activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR004871 Cleavage/polyA-sp_fac_asu_C 966 1355
IPR018846 Cleavage/polyA-sp_fac_asu_N 100 666
No external refs found!