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  5. Spa_g53642

Spa_g53642 (PRCGB, PBD1)


Aliases : PRCGB, PBD1

Description : beta-type-4 component *(PBD) of 26S proteasome & original description: none


Gene families : OG0004283 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004283_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g53642

Target Alias Description ECC score Gene Family Method Actions
AT4G14800 PBD2 20S proteasome beta subunit D2 0.02 OrthoFinder output from all 47 species
Adi_g012746 PRCGB, PBD1 beta-type-4 component *(PBD) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Aop_g00205 PRCGB, PBD1 beta-type-4 component *(PBD) of 26S proteasome &... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020554.80 PRCGB, PBD1 Protein degradation.26S proteasome.20S core... 0.02 OrthoFinder output from all 47 species
Cre14.g610950 PRCGB, PBD1 Protein degradation.26S proteasome.20S core... 0.06 OrthoFinder output from all 47 species
Dac_g04914 PRCGB, PBD1 beta-type-4 component *(PBD) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Dde_g00381 PRCGB, PBD1 beta-type-4 component *(PBD) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
GSVIVT01001182001 PRCGB, PBD1 Protein degradation.26S proteasome.20S core... 0.02 OrthoFinder output from all 47 species
Gb_19480 PRCGB, PBD1 Proteasome subunit beta type-2-A OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os03g48930.1 PRCGB, PBD1,... component beta type-4 of 26S proteasome 0.03 OrthoFinder output from all 47 species
Len_g12839 PRCGB, PBD1 beta-type-4 component *(PBD) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Mp4g04320.1 PRCGB, PBD1 component beta type-4 of 26S proteasome 0.04 OrthoFinder output from all 47 species
Solyc09g082320.3.1 PRCGB, PBD1,... component beta type-4 of 26S proteasome 0.02 OrthoFinder output from all 47 species
Tin_g04912 PRCGB, PBD1 beta-type-4 component *(PBD) of 26S proteasome &... 0.05 OrthoFinder output from all 47 species
Zm00001e012245_P001 PRCGB, PBD1,... component beta type-4 of 26S proteasome 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005839 proteasome core complex IEA Interproscan
BP GO:0051603 proteolysis involved in protein catabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001353 Proteasome_sua/b 42 221
No external refs found!