Aliases : PRCGB, PBD1
Description : beta-type-4 component *(PBD) of 26S proteasome & original description: none
Gene families : OG0004283 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004283_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT4G14800 | PBD2 | 20S proteasome beta subunit D2 | 0.02 | OrthoFinder output from all 47 species | |
Adi_g012746 | PRCGB, PBD1 | beta-type-4 component *(PBD) of 26S proteasome &... | 0.02 | OrthoFinder output from all 47 species | |
Aop_g00205 | PRCGB, PBD1 | beta-type-4 component *(PBD) of 26S proteasome &... | 0.04 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00020554.80 | PRCGB, PBD1 | Protein degradation.26S proteasome.20S core... | 0.02 | OrthoFinder output from all 47 species | |
Cre14.g610950 | PRCGB, PBD1 | Protein degradation.26S proteasome.20S core... | 0.06 | OrthoFinder output from all 47 species | |
Dac_g04914 | PRCGB, PBD1 | beta-type-4 component *(PBD) of 26S proteasome &... | 0.03 | OrthoFinder output from all 47 species | |
Dde_g00381 | PRCGB, PBD1 | beta-type-4 component *(PBD) of 26S proteasome &... | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01001182001 | PRCGB, PBD1 | Protein degradation.26S proteasome.20S core... | 0.02 | OrthoFinder output from all 47 species | |
Gb_19480 | PRCGB, PBD1 | Proteasome subunit beta type-2-A OS=Arabidopsis thaliana... | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os03g48930.1 | PRCGB, PBD1,... | component beta type-4 of 26S proteasome | 0.03 | OrthoFinder output from all 47 species | |
Len_g12839 | PRCGB, PBD1 | beta-type-4 component *(PBD) of 26S proteasome &... | 0.03 | OrthoFinder output from all 47 species | |
Mp4g04320.1 | PRCGB, PBD1 | component beta type-4 of 26S proteasome | 0.04 | OrthoFinder output from all 47 species | |
Solyc09g082320.3.1 | PRCGB, PBD1,... | component beta type-4 of 26S proteasome | 0.02 | OrthoFinder output from all 47 species | |
Tin_g04912 | PRCGB, PBD1 | beta-type-4 component *(PBD) of 26S proteasome &... | 0.05 | OrthoFinder output from all 47 species | |
Zm00001e012245_P001 | PRCGB, PBD1,... | component beta type-4 of 26S proteasome | 0.04 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0005839 | proteasome core complex | IEA | Interproscan |
BP | GO:0051603 | proteolysis involved in protein catabolic process | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | HCCA |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0006351 | DNA-templated transcription | IEP | HCCA |
BP | GO:0006399 | tRNA metabolic process | IEP | HCCA |
BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | HCCA |
BP | GO:0006511 | ubiquitin-dependent protein catabolic process | IEP | HCCA |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
BP | GO:0009057 | macromolecule catabolic process | IEP | HCCA |
BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
MF | GO:0016874 | ligase activity | IEP | HCCA |
MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | HCCA |
MF | GO:0019899 | enzyme binding | IEP | HCCA |
BP | GO:0019941 | modification-dependent protein catabolic process | IEP | HCCA |
MF | GO:0031625 | ubiquitin protein ligase binding | IEP | HCCA |
BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
BP | GO:0043038 | amino acid activation | IEP | HCCA |
BP | GO:0043039 | tRNA aminoacylation | IEP | HCCA |
BP | GO:0043632 | modification-dependent macromolecule catabolic process | IEP | HCCA |
BP | GO:0044248 | cellular catabolic process | IEP | HCCA |
BP | GO:0044265 | cellular macromolecule catabolic process | IEP | HCCA |
MF | GO:0044389 | ubiquitin-like protein ligase binding | IEP | HCCA |
BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
BP | GO:0097659 | nucleic acid-templated transcription | IEP | HCCA |
MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | HCCA |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR001353 | Proteasome_sua/b | 42 | 221 |
No external refs found! |